Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0306 ATGGCTGCTTCAACAATGGCTCTCTCTTCACCGTCATTGGCTGGCCAAGCAATCAAGCTCTCCCCCTCCACCCCTGACCTTTCCGGTGGAAGGATTTCCATGAGGAAAACAGCCTCTAAGTCTGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTATTTGGGCCCATTCTCCGGTGAGGCCCCATCTTACCTCACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCCGGGCTTTCTGCTGACCCTGAGACTTTTGCTAGAAACCGTGAACTTGAAGTTATCCACTCCAGATGGGCCATGTTGGGAGCCTTGGGCAGTGTTTTCCCCGAACTCTTGGCCCGTAACGGTGTGAAGTTCGGCGAGGCTGTGTGGTTTAAGGCTGGATCTCAGATATTCAGTGAGGGTGGACTTGACTACTTGGGCAATCCAAGCCTGATTCATGCACAGAGCATCCTGGCTATTTGGGCCTCTCAAGTTATTTTGATGGGTGCCGTGGAGGGTTACCGTATTGCCGGTGGGCCTCTCGGTGAGGTGACTGACCCAATTTACCCCGGTGGAAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAAGTGAAAGAGCTGAAGAACGGTAGATTAGCCATGTTCTCCATGTTCGGTTTCTTTGTTCAGGCGATTGTGACCGGAAAGGGACCGCTGGAAAACCTTGCAGACCACCTTGCTGACCCTGTCAACAACAATGCTTGGGCATATGCCACAAACTTTGTCCCCGGAAAGTGA 795 0.5283 MAASTMALSSPSLAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0306 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vra11g0306 264 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 1 264 - -
Vra11g0306 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vra11g0306 264 MobiDBLite consensus disorder prediction 19 45 - -
Vra11g0306 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vra11g0306 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0306 Vra-Chr11 2162455 2163388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0306 1 264 Chloroplast and Mitochondria Gene Families AT2G34430 87.594 1.77e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0306 K08912 - ccaj:109815895 524.628