Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0305 ATGAACCGCGGCAAGGAGAGAGAAACTACAGCGTTCCGAGCTCTGGCGGATCGGTGCCGGAGCCTCGAGGAGAAGCAGGCCAAGCTGAGGGAGGAATTCGACGAGCTACTGCAGAAGAAGCTCACAGTCAGGCACGATAACGATAACAATAACGAGGTCATTGCTGATTCAACAACCCTCGGTTTTCTCTCCGGTTACTTCTTCTCCGGAAGTCCCTACGCAACCCTGCTGAAATGTATGGGCCACGCCGTTCACGTTGTCAGAGTTCCCTCCGCTGAGATCGTGTACTGGAATCACACGGCGGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGCCAAAGAGCATCAAAGCTTCTCCCACTGCTGCATAGTAATGATGACACAGTTTCCAAGAAGACTTCAACAGATGCTGTCGCAGGTGATGAAAAGCTAGAGAAGCGTGGCATATATGAAACAAAACCTAATTCTAGACATTTTCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCTACTGCAGAATTTGGCCAACCTTCTAAAATTATACGTGATCCTCTCTATGTTCAGGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATAAAAAATAATTGTGCAGATGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACAAAATCTTCAGAAATGCAATGCTTCACTTCCAATGAAGAGAGCGGAAACAACAGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCTACGACTATGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGGGTCGCAACTGCCAAGTTCGAGGGAAAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTTAAACTCTATTTCAGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATCTACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTGAATACGAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTGGAACTTCCAGAGGACCTTGATCCCCATGTTGCGTCAATCATCGATGATTGCTGGCGAAGTGATCCAGAGCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACGTTGTTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCACAATCCTAA 1833 0.4354 MNRGKERETTAFRALADRCRSLEEKQAKLREEFDELLQKKLTVRHDNDNNNEVIADSTTLGFLSGYFFSGSPYATLLKCMGHAVHVVRVPSAEIVYWNHTAETLYGWKDYEIIGQRASKLLPLLHSNDDTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVTEASEENESTAEFGQPSKIIRDPLYVQAAKLQTGVRAKYGKDNGNIKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKEQNLQKCNASLPMKRAETTACASRASTVSKDYSEATTMVTGDEVQKQQEGSQLPSSRESTGSHESLSGKGDYELNSISECEIHWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNNQTLDIRRRLRVALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLELPEDLDPHVASIIDDCWRSDPERRPSFEELIQRTLFLVNRVTAVSIRRIAQS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0305 610 Coils Coil 12 39 - -
Vra11g0305 610 ProSitePatterns Protein kinases ATP-binding region signature. 346 367 IPR017441 GO:0005524
Vra11g0305 610 Pfam Protein tyrosine and serine/threonine kinase 340 590 IPR001245 GO:0004672|GO:0006468
Vra11g0305 610 ProSiteProfiles PAS repeat profile. 91 143 IPR000014 -
Vra11g0305 610 SMART serkin_6 340 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0305 610 Gene3D Transferase(Phosphotransferase) domain 1 419 600 - -
Vra11g0305 610 Gene3D PAS domain 69 173 - -
Vra11g0305 610 ProSiteProfiles Protein kinase domain profile. 340 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0305 610 MobiDBLite consensus disorder prediction 285 323 - -
Vra11g0305 610 SUPERFAMILY Protein kinase-like (PK-like) 326 599 IPR011009 -
Vra11g0305 610 Gene3D Phosphorylase Kinase; domain 1 333 417 - -
Vra11g0305 610 PRINTS Tyrosine kinase catalytic domain signature 414 427 IPR001245 GO:0004672|GO:0006468
Vra11g0305 610 PRINTS Tyrosine kinase catalytic domain signature 453 471 IPR001245 GO:0004672|GO:0006468
Vra11g0305 610 PRINTS Tyrosine kinase catalytic domain signature 500 510 IPR001245 GO:0004672|GO:0006468
Vra11g0305 610 PRINTS Tyrosine kinase catalytic domain signature 519 541 IPR001245 GO:0004672|GO:0006468
Vra11g0305 610 PRINTS Tyrosine kinase catalytic domain signature 563 585 IPR001245 GO:0004672|GO:0006468
Vra11g0305 610 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 164 596 - -
Vra11g0305 610 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 14 121 - -
Vra11g0305 610 SUPERFAMILY PYP-like sensor domain (PAS domain) 73 125 IPR035965 -
Vra11g0305 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vra11g0305 610 PANTHER SERINE-THREONINE PROTEIN KINASE 164 596 - -
Vra11g0305 610 PANTHER SERINE-THREONINE PROTEIN KINASE 14 121 - -
Vra11g0305 610 CDD STKc_MAP3K-like 346 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0305 Vra-Chr11 2149062 2155583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0305 306 598 MAP Kinase Kinase Kinase AT4G23050 68.259 4.38e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vra11g0305 PK_Tyr_Ser-Thr 5.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0305 - - vra:106777922 981.089