Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0304 ATGGGTAAGGCATCCAAATGGTTTCGCGCCATTCTTGCTCTCAAAAGACCAGACTCGCCGTCCGCCACCGCTTCCAAACCGCCCAAGGACAAACGACGGTGGAGCTTTGTCAAATCCTACAGAGAAAAGCACCATTCCACCGTCGACCACCACGCACCACTCACCGACAGAGGCCACTCCTCGGTACACGCGGAAAGCGCTGATCCCAACCTTCCAGCACTCACCGCCGTCACCGTCCTCGGAGGCGTTATTCCAGAAGAATGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTAGAGCTTTAAAAGGACTGGTGAAGCTACAGGCATTAGTGAGAGGTGAGATAGAAAGAAAGCGAACGTCAGAATGGCTGCAAAGAGTACAAACTCTCTTACGTATTCAGGCCCAGGCCCAATTGCGTGTTGGCCGGGCCCAAATTTTGCACTCCTCTCGTTTGAATGCAAACTCATCCACTGGCCACCTCCATGGTTCACCACACAAATCTGAAAGCCCCATCAGACCCGAGAGCGTGAAATATGATCACTCACCATCATTACTCAAGAGAAACAGCTCAAAGTCCCGCATGCATATCAACGTTAACGAAGACAAATCATGGCATGAACGAAGATGGTGGTCAAGAGCTTGTAGCCTGGACGAAGAAAGACGTGTGAAATGGAACGAGGTTGAGGAGAACTCGTCGTGTGGTGCTGACAATAGTCCTCGTACTTTATCCTCTTCTTCTAAAAATGGTGGCTCCAAAAGAAGCCCTTTTACTCCTACCAAGAGCCATCTGAGTGATTATTCTGAACCTGATTATCCGAGTTACATGGCATACACTGAATCATCAATGGCAAAGGTAAGATCTGTGAGTGCTCCAAAGCAGAGGCCCACCGAATACCAGAGGTCAAGTTCATCTTCTAACAGCTACTCGCTTCATGATAATGGATTTCAAAGGGTAGCATCATCACACGCAAACTTCACTACCAGGGCTTACCCTGCTTCTGGTCGTTTGGACAAGCCTGGGTTGTCTGTGCCGTATTATAAATACTGA 1074 0.4926 MGKASKWFRAILALKRPDSPSATASKPPKDKRRWSFVKSYREKHHSTVDHHAPLTDRGHSSVHAESADPNLPALTAVTVLGGVIPEEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGEIERKRTSEWLQRVQTLLRIQAQAQLRVGRAQILHSSRLNANSSTGHLHGSPHKSESPIRPESVKYDHSPSLLKRNSSKSRMHINVNEDKSWHERRWWSRACSLDEERRVKWNEVEENSSCGADNSPRTLSSSSKNGGSKRSPFTPTKSHLSDYSEPDYPSYMAYTESSMAKVRSVSAPKQRPTEYQRSSSSSNSYSLHDNGFQRVASSHANFTTRAYPASGRLDKPGLSVPYYKY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0304 357 Pfam Protein of unknown function (DUF4005) 247 324 IPR025064 -
Vra11g0304 357 PANTHER IQ-DOMAIN 5-RELATED 1 349 - -
Vra11g0304 357 MobiDBLite consensus disorder prediction 43 63 - -
Vra11g0304 357 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Vra11g0304 357 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 349 - -
Vra11g0304 357 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Vra11g0304 357 SMART iq_5 85 107 IPR000048 GO:0005515
Vra11g0304 357 MobiDBLite consensus disorder prediction 239 275 - -
Vra11g0304 357 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Vra11g0304 357 MobiDBLite consensus disorder prediction 43 67 - -
Vra11g0304 357 MobiDBLite consensus disorder prediction 236 277 - -
Vra11g0304 357 MobiDBLite consensus disorder prediction 174 195 - -
Vra11g0304 357 Gene3D - 86 138 - -
Vra11g0304 357 MobiDBLite consensus disorder prediction 294 321 - -
Vra11g0304 357 MobiDBLite consensus disorder prediction 162 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0304 Vra-Chr11 2144425 2147252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0304 1 53 IQD Protein Family AT4G23060 43.548 2.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0304 - - vra:106777320 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0304 11 2144425 2147252 Vra11g0304 11 2144425 2147252 ECH
Vra7g1475 7 32079698 32083058 Vra11g0304 11 2144425 2147252 PCT