Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0303 ATGCCGACGACAAGGTCCCCGAGCCCTTCTTCTGAGGATATCGTCGATTCGACACCGCTTCTGGCCAATTCTGGCGGTTCCTCTGAGGAGCTCACCGCCAGCCGTCGATTTGCTCGCCGGCAGAGGCTACGGCAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGCGCAGAATGATGCGCGAGCCATCGATGCTGGTCCGCGAGGCGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTGGACATCGTTTGGAACTTCGCGTTCGTGGTTGTGGCGGGGACCGTGTTGGTTTTGAGCGCGAGCGAAGCGCCGGGGATGCCTCTGAGGTTGTGGATTTTAGGGTACGCTATGCAATGCGTTCTTCACATGGTTTGCGTTTGCGTGGAGTATAAGAGGAGGAGGAGGAACCAACGCGACACCGCGTCGGTTTCAGCGCAGGACAGAGTTGGGAGCAGCAGTGGAAATTTGAGTTCATCTTCGAGGGAGGGTTCTGCTTCTGGCTCTGCGCAGTATGTGTCGTTGGGGCAACTCGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCCGGTGGTCAAGAATTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGCATAATTTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGCCTGCCATGTATCATTGCACTTCTATACGCAGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCCGGAGAATTCAAAGCAATGAGAAATTTACCGGAACTATACAGGGGCCTGTTGGAGGAATAATGACTGAATGCCACGCTGAGTCACCTATGGAACATGTTCTTGCCGAGGAGGATGCGGAATGTTGCATCTGCCTTTCCTCTTATGACGATGGGGTTGAGTTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCCACTTGCCCTCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTCAGTCAAGAGGAGGTGTAG 1170 0.5103 MPTTRSPSPSSEDIVDSTPLLANSGGSSEELTASRRFARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGTVLVLSASEAPGMPLRLWILGYAMQCVLHMVCVCVEYKRRRRNQRDTASVSAQDRVGSSSGNLSSSSREGSASGSAQYVSLGQLDEEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQELAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIQSNEKFTGTIQGPVGGIMTECHAESPMEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNLSQEEV* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0303 389 MobiDBLite consensus disorder prediction 149 174 - -
Vra11g0303 389 CDD RING-H2_RNF111_like 333 377 - -
Vra11g0303 389 MobiDBLite consensus disorder prediction 152 174 - -
Vra11g0303 389 SUPERFAMILY RING/U-box 323 381 - -
Vra11g0303 389 SMART ring_2 334 374 IPR001841 -
Vra11g0303 389 MobiDBLite consensus disorder prediction 1 31 - -
Vra11g0303 389 Pfam Ring finger domain 333 375 IPR001841 -
Vra11g0303 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 388 IPR013083 -
Vra11g0303 389 PANTHER TARGET OF ERK KINASE MPK-1 6 389 - -
Vra11g0303 389 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 389 - -
Vra11g0303 389 MobiDBLite consensus disorder prediction 1 32 - -
Vra11g0303 389 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0303 Vra-Chr11 2135824 2142090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0303 8 382 C3H Transcription Factor Family AT1G68070 49.206 4.58e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0303 - - gmx:100790497 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1477 7 32091827 32096184 Vra11g0303 11 2135824 2142090 PCT