Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0300 ATGATGGCGCCATTACCGGTGGAGCAAACCGCTGAATCAGCGCCGGCGGAGTCACAGAGATCTATCCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCTGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTTCGGGACATACAACGCCGGAAAATATTACCGGTGCCACCAACTGCGCAACCTGCAGTGGCCACAGCCAATACTGTGACGGTTGCTGTGGCGGCACCGGCGATCAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAATAATATTACAGTGCACCGTACCACGAGTTGCACCACTACGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACCAGTGCTGTGAGGACCGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCGAAGCATGTTTCGTCAGCTGATGACGCCATGCATGGTGGCGCTGCCGGCTTAGCGCCGTGTACGAATGCGAATGCAGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGAGGCCGAACCGGAGGTAGAAGAACAGAATCAAATGCAAACGCGAGCTCAGGCACAGACACAGACACAGTCCTCTCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAACCGCTTGATGGGGAGGAGTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGGAAATAA 1065 0.5268 MMAPLPVEQTAESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAQPAVATANTVTVAVAAPAIRTVSPTTSGDEQVLSSNSSPIAGNNNITVHRTTSCTTTPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHVSSADDAMHGGAAGLAPCTNANAAEAEVPKLFGVSIGLKRCRTECEAEPEVEEQNQMQTRAQAQTQTQSSQEPDGGPDVKSEPLDGEESDDQDPRWLELGK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0300 354 Coils Coil 181 208 - -
Vra11g0300 354 MobiDBLite consensus disorder prediction 1 20 - -
Vra11g0300 354 Gene3D - 18 116 IPR036388 -
Vra11g0300 354 MobiDBLite consensus disorder prediction 301 354 - -
Vra11g0300 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 338 IPR027725 -
Vra11g0300 354 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Vra11g0300 354 MobiDBLite consensus disorder prediction 305 328 - -
Vra11g0300 354 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 8 338 - -
Vra11g0300 354 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0300 354 MobiDBLite consensus disorder prediction 148 170 - -
Vra11g0300 354 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0300 354 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0300 354 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0300 354 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0300 354 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0300 Vra-Chr11 2124538 2126924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0300 17 354 HSF AT4G11660 51.268 1.71e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra11g0300 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0300 K09419 - gmx:100791020 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0300 11 2124538 2126924 Vra11g0300 11 2124538 2126924 ECH