Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0290 ATGAAGCCTCGTACTTCATTATGCTTTCTCTCTTTGATTTACACGCTCTCTTTTGTGGCTCCTGACACTCTGCCCTCTAATGAAGTTTGGGCGCTTAGGAGCTTCAAAGAAGCTGTTTATGAAGACCTATATCAAGTTTTGTCCGATTGGGATACGTTAGAAGCAGATCCTTGTAACTGGTTTGGGGTCACTTGCACTATGGTGCGAGATCATGTCATCAAGCTAAACATATCAGGATCATCATTAAAGGGGTTTCTTGCACCAGAGTTGGGGCAACTCACCCACTTGCAAGAACTAATTTTGCACGGAAACAATCTCATTGGAACAATACCTAGAGAGTTGGGCGACTTGAAATATCTTAGGGTGCTTGATCTAGGAATGAATCAGTTAACAGGACCAATTCCTCCGGAGTTTGGAAATCTAACTCAAGTTGTGAAAATAAACTTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCCAGAGCTTGGAAACTTGAGATTCCTTCAAGAACTTCAGCTGGATAGGAATAGACTTCAAGGACCTATTCCTGCTGGCGATAGCTCAAATTTTGCTTCAAATATGCATGGAATGTATGTATCCAAGGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGACTTCTCATATAATTTTTTAGTTGGTAGCATACCCAAATGCTTGCAGTATCTTCCGAGGTTAAGCTTTCAAGGGAATTGCATCCAGAGCCAGGATATAAAGCAGCGACCTCCTATACAGTGTGCGGGTGCTTCTCCTGCCAATGCCAAGAGTCAGCCAGTGGTGAATCCAAGTCACCAACCTACTGAATATGTGTCCAAGCATCATGGAACGTCAAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGGACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCAGAGATGTAACAAAAAATCATCTATCATTATTCCTTGGAAAAAATCTGGAAGCCAGAAAGATCAGACGGCAGTATATATAGACCCTGAGATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTTTACAAGGGAACAATGAAAGGTGGACCTGAGATTGCTGTGATTTCCCTCTGCATCAGGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATATAGGAAAACTACTTGGTTACTGTAGAGAAGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACCTTCATTGTTATGAAGAAGGATGTCAATTCTCGTGGACACGGCGTATGAAGATCGCCATAGGCATTGCGCGTGGACTCAAGTATTTGCATACCGAAGTAGAGCCTCCATTTACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTCGATTTTGAAAGTTGGAAAACAATTCTTGAAAGATCAGAAAAGAATTCGGGTTCCATTGGCAGCCAAGGTGCTATCTGTGTTCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACATATTTGCTTTTGGGGTACTTCTACTGGAGTTAATTAGCGGAAGACCTCCATACTGTAAGGACAAAGGATACTTGGTTGACTGGGCCAAGGACTACCTCGAAAGGCCAGAAGAAATGTCAAGCCTGGTGGATCCTGAACTGAAGCATTTTAGACATGAAGACCTCAAAGTGATATGCGAGGTAATAACTCTCTGTATCAACCCTGATAAAACTGCGCATCCATCTATGAGAGAATTATGTAGCATGCTGGAGAACAAAATTGATACATCAGTAAGCGTGGAGCTTAAGTCGTCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCTTAA 1992 0.4277 MKPRTSLCFLSLIYTLSFVAPDTLPSNEVWALRSFKEAVYEDLYQVLSDWDTLEADPCNWFGVTCTMVRDHVIKLNISGSSLKGFLAPELGQLTHLQELILHGNNLIGTIPRELGDLKYLRVLDLGMNQLTGPIPPEFGNLTQVVKINLQSNGLTGRLPPELGNLRFLQELQLDRNRLQGPIPAGDSSNFASNMHGMYVSKENVTGFCRSSQLKVADFSYNFLVGSIPKCLQYLPRLSFQGNCIQSQDIKQRPPIQCAGASPANAKSQPVVNPSHQPTEYVSKHHGTSKPVWLLALEIVTGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSGSQKDQTAVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIREEHWTGYLELYFQREVADLARLNHENIGKLLGYCREDTPFTRMLVFDYASNGTLHDHLHCYEEGCQFSWTRRMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGAICVLPNSLEARHLDTKGNIFAFGVLLLELISGRPPYCKDKGYLVDWAKDYLERPEEMSSLVDPELKHFRHEDLKVICEVITLCINPDKTAHPSMRELCSMLENKIDTSVSVELKSSSLAWAELALLS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0290 663 Gene3D Ribonuclease Inhibitor 140 261 IPR032675 -
Vra11g0290 663 Gene3D Transferase(Phosphotransferase) domain 1 446 653 - -
Vra11g0290 663 Gene3D Phosphorylase Kinase; domain 1 337 445 - -
Vra11g0290 663 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vra11g0290 663 PANTHER PROTEIN MALE DISCOVERER 2 4 661 - -
Vra11g0290 663 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0290 663 SUPERFAMILY Protein kinase-like (PK-like) 343 638 IPR011009 -
Vra11g0290 663 MobiDBLite consensus disorder prediction 256 283 - -
Vra11g0290 663 MobiDBLite consensus disorder prediction 261 283 - -
Vra11g0290 663 SUPERFAMILY L domain-like 26 238 - -
Vra11g0290 663 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Vra11g0290 663 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vra11g0290 663 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 661 - -
Vra11g0290 663 Pfam Protein tyrosine and serine/threonine kinase 368 636 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0290 Vra-Chr11 2049660 2054960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0290 1 638 Receptor kinase-like Gene Family AT5G16000 26.970 1.41e-53 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vra11g0290 PK_Tyr_Ser-Thr 9.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0290 - - gmx:100794714 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0290 11 2049660 2054960 Vra11g0290 11 2049660 2054960 ECH