Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0288 ATGGCGAAGTTGTTAGCGTTAAGTTGCTGGCGAAACCTCTCACCGCGACCTCATTACCCCTCCATGCCTAAATATCCTAAGGGGCAGCCCGCCACCACCGTCGAAGAGCTCTCTGACTCCACCGCTCTTTTCTCCGTCGTCGGAATGACTTGTGCTGCCTGCGCCGGATCCGTCGAGAAGGCCGTCAAACGCCTCCCCGGGATCCGCGAGGCCATCGTCGACGTCCTCAACAACCGCGCCCACGTCGTCTTCTACCCCTCTTTCGTTAACGAAGAGACCATTCGCGAGGCCATTGAAGACGCGGGTTTCGAAGCGCTATTACTCACAGATGGCACTGACGACAAATCTGTTAAAGTATGCCGCATCCAAATCAAAGGTATGACCTGCACCTCCTGTTCCTCCACGCTAGAATCCGTTTTACGAGGCCTTCACGGTGTCCTCGAAGCCCACGTGGGCCTGGCCACCGAAGAGGCCCAAGTCCATTACAACCCAAATCTCCTCCTCAATCCAAACGACATTTTACAAGCCATAGAAGATTCCGGATTCGAAGCAGTGCTCATTAGTTCAAGCGAAGACTTCACCAAGATAGACCTCCGCGTGGAAGGCGCGGTAACCGACGGCACTTCCATGACGCCGATACTAGATTCTCTGCGGACACTTCCAGGAGTCCTTGTGGTGGACTTAACAGAGGAATTCAGCAAAATATCGGTTTCTTACAAACCGGACGTCACGGGACCCAGAGATTTGATCAACGTGATTGAGCAAACAGGCAATGGGAATTTCAAGGCGACGATATATCCTACGGAACAAGGACAAAGAAATTCTCACAGACGCGAGGAGACAAGGCAGTATTATAAATCTTTCTTATGGAGCTTGGTGTTTACTATTCCCGTGTTTCTTACCTCCATGGTGTTTATGTATGTACCTGGAATTAAGGACGCCCTTGATGCAAAAGTTGTGAACATGCTTACCATGGGGGAGGTTGCTCGGTGGGTGCTGTCCACGCCGGTTCAGTTCGTACTCGGCTGGCGGTTTTACTACGGTTCTTATAAATCGTTACGCCGTGGCTCTGCGAACATGGATGTTCTCATTGCGTTGGGGACAAACGCTGCGTATTTTTACTCTGTTTACTCTGTTTTGAGAGCTGCTACTTCTCCGCATTTTGAGGGGAATGATTTCTTCGAAACGAGCGCGATGCTTATTTCGTTCATTCTGCTTGGGAAGTATCTCGAGATTTTGGCGAAGGGGAAGACGTCTGATGCGATTGCCAAGCTCATGAACTTGACACCCGACACGGCGGTTCTACTGACTTTGGACGCTGATGGGAATGTTGTTGGGGAGGAGGAGATTGATAGCAGGTTGGTTCAGAAGAATGATGTGATTAAGATTGTTCCTGGGGCGAAAGTGGCTTCCGATGGGTTTGTTGTGTGGGGGCAGAGTCACGTGAATGAGAGCATGATCACGGGGGAAGCGCGTCCCGTGGCGAAGAGGAAAGGGGACACTGTTATTGGGGGGACTGTGAATGAGAATGGAGTTTTGCATGTTAAGGCGACGAGGGTAGGATCGGAGAGTGCTCTTTCTCAGATTGTTCGCCTTGTGGAGTCGGCGCAGATGGCCAAAGCACCTGTGCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATTGTGATCTCGTTCACGACTTGGCTTGCCTGGTTTTTGGCGGGAAGATATCATGCTTATCCAAAGTCTTGGATACCGTCTTCAATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCAACTGCGGTTATGGTTGGGACTGGAGTTGGTGCATCCCAGGGTGTGCTCATCAAAGGAGGGCAGGCATTAGAGAGTGCACATAAGGTGAACTGCATTGTTTTCGATAAGACGGGTACACTCACTGTCGGGAAACCTGTTATAGTGAGAACAGAATTGTTGACAAAAATGGTGCTCCGGGAATTCTATGAACTTGTGGCTGCAACTGAGGTGAATAGTGAGCATCCATTGGCCAAGGCCGTTGTTGAGTATGCCAAAAAATTTCGAGATGAAGAGAACCCTTCCTGGCCAGAAGCTCGAGATTTTGTTTCCATTACAGGACATGGAGTAAAGGCCACTGTTCAAAACAAAGAAATAATGGTCGGTAATAAGAGCCTGTTGGCTGAACATAACATTGCAATTCCCGTTGAAGCTGAAAATATGCTTGCTGAAGCCGAAAAGATGGCTCAAACAGGAATATTGGTATCTATAAGTGGGAAAGTGGCAGGAGTTTTAGCAGTATCCGATCCACTGAAACCAGGTGCTCAAGAAGTTATTTCCATCCTAAAATCAATGAAAATCAAAAGCATTATGGTGACTGGGGACAACTTCGGAACAGCTAGTTCTATTGCGAGGGAAGTAGGAATTGAGAATGTTATAGCTGAGGCTAAACCGGATCAAAAAGCAGAGAAAGTGAAAGACTTGCAGGCTTCTGGTTACACTGTGGCTATGGTGGGGGATGGTATCAATGATTCGCCTGCACTTGTGGCAGCGGATGTGGGAATGGCAATTGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTCATGAAGAGCAACTTGGAAGATGTCATAACTGCTATTGACCTTTCAAGAAAAACATTTACCCGTATAAGGCTGAATTACGTTTGGGCTTTGGGTTATAACTTACTTGGAATCCCAATTGCTGCTGGAGTTCTTTTCCCTTCAACAAGGTTCAGATTGCCACCCTGGATTGCTGGCGCTGCTATGGCTGCTTCCTCTGTCAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCAGGAAGCTAGACAACCTTGAAATACGAGGCATAAGCATCGAGTCATCCACTGATATATGA 2958 0.4834 MAKLLALSCWRNLSPRPHYPSMPKYPKGQPATTVEELSDSTALFSVVGMTCAACAGSVEKAVKRLPGIREAIVDVLNNRAHVVFYPSFVNEETIREAIEDAGFEALLLTDGTDDKSVKVCRIQIKGMTCTSCSSTLESVLRGLHGVLEAHVGLATEEAQVHYNPNLLLNPNDILQAIEDSGFEAVLISSSEDFTKIDLRVEGAVTDGTSMTPILDSLRTLPGVLVVDLTEEFSKISVSYKPDVTGPRDLINVIEQTGNGNFKATIYPTEQGQRNSHRREETRQYYKSFLWSLVFTIPVFLTSMVFMYVPGIKDALDAKVVNMLTMGEVARWVLSTPVQFVLGWRFYYGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAVLLTLDADGNVVGEEEIDSRLVQKNDVIKIVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIVISFTTWLAWFLAGRYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVRTELLTKMVLREFYELVAATEVNSEHPLAKAVVEYAKKFRDEENPSWPEARDFVSITGHGVKATVQNKEIMVGNKSLLAEHNIAIPVEAENMLAEAEKMAQTGILVSISGKVAGVLAVSDPLKPGAQEVISILKSMKIKSIMVTGDNFGTASSIAREVGIENVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFTRIRLNYVWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPRKLDNLEIRGISIESSTDI* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0288 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Vra11g0288 985 CDD P-type_ATPase_Cu-like 286 961 - -
Vra11g0288 985 Gene3D - 35 107 - -
Vra11g0288 985 Gene3D - 415 537 - -
Vra11g0288 985 Gene3D - 732 782 IPR023299 GO:0000166
Vra11g0288 985 Gene3D - 654 731 IPR023299 GO:0000166
Vra11g0288 985 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase 1 signature 142 163 - -
Vra11g0288 985 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 360 960 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra11g0288 985 SFLD C1.7: P-type atpase like 629 903 - -
Vra11g0288 985 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Vra11g0288 985 SFLD p-type atpase 629 903 IPR044492 -
Vra11g0288 985 TIGRFAM TIGR00003: copper ion binding protein 122 184 IPR006122 GO:0005507
Vra11g0288 985 TIGRFAM TIGR00003: copper ion binding protein 44 105 IPR006122 GO:0005507
Vra11g0288 985 CDD HMA 44 105 IPR006121 GO:0046872
Vra11g0288 985 Gene3D - 118 189 - -
Vra11g0288 985 Gene3D - 614 908 IPR023214 -
Vra11g0288 985 SUPERFAMILY HMA, heavy metal-associated domain 41 109 IPR036163 GO:0046872
Vra11g0288 985 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 933 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra11g0288 985 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Vra11g0288 985 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
Vra11g0288 985 PRINTS P-type cation-transporting ATPase superfamily signature 776 787 - -
Vra11g0288 985 PRINTS P-type cation-transporting ATPase superfamily signature 798 808 - -
Vra11g0288 985 PRINTS P-type cation-transporting ATPase superfamily signature 851 870 - -
Vra11g0288 985 PRINTS P-type cation-transporting ATPase superfamily signature 874 886 - -
Vra11g0288 985 Pfam E1-E2 ATPase 429 625 - -
Vra11g0288 985 ProSiteProfiles Heavy-metal-associated domain profile. 119 186 IPR006121 GO:0046872
Vra11g0288 985 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 12 971 - -
Vra11g0288 985 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Vra11g0288 985 Pfam haloacid dehalogenase-like hydrolase 643 865 - -
Vra11g0288 985 PANTHER ATP7, ISOFORM B 12 971 - -
Vra11g0288 985 ProSitePatterns Heavy-metal-associated domain. 124 153 IPR017969 GO:0046872
Vra11g0288 985 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Vra11g0288 985 Pfam Heavy-metal-associated domain 122 183 IPR006121 GO:0046872
Vra11g0288 985 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Vra11g0288 985 PRINTS Copper-transporting ATPase signature 345 364 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase signature 397 416 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase signature 417 435 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase signature 556 570 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase signature 828 845 - -
Vra11g0288 985 PRINTS Copper-transporting ATPase signature 924 938 - -
Vra11g0288 985 CDD HMA 122 184 IPR006121 GO:0046872
Vra11g0288 985 SUPERFAMILY HAD-like 646 957 IPR036412 -
Vra11g0288 985 SUPERFAMILY HMA, heavy metal-associated domain 116 190 IPR036163 GO:0046872
Vra11g0288 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 919 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0288 Vra-Chr11 2042334 2046541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0288 3 980 Primary Pumps ATPases AT1G63440 74.899 0.0 1513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0288 K17686 - gmx:100816893 1699.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0288 11 2042334 2046541 Vra11g0288 11 2042334 2046541 ECH
Vra11g0288 11 2042334 2046541 Vra7g3496 7 54280002 54288767 PCT