Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0287 ATGGGTGAGAAGTTAGAGTGTTGGGAGTGCAGCAGCAGTTTGCAGTGCTGTGGAAATTTGTGGCCTAAGGCACGCTATCCTTCGATGACGGCGGTGGAAGCGGGAAAGACGGTGGCGGAATTAGAAGGATCAGAGAGCAAAGTGGTTTTGTTCAGCGTTATGGGAATGACGTGTGCTGCGTGTGCCGGATCCGTTGAGAAAACCATCAAACGCTTACCTGGAATCCGCGAGGCCGTTGTTGATGTCTTGAATCATAAAGCTCAGGTTCTTTACCTTCCCTCAATGGTTAACGAGGAGAGGATACGCGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGTTATTGAAGAAGACTCCAACTATACCTCAACTCAGATATGCCGCATACACATACGAGGCATGACTTGTACCTCTTGCTCCTCCACTATTGAATCAGCTCTACAATCCCTTCGTGGGGTGCACAAGGCACGAGTGGCCTTAACAACAGAAGAAGCAGAAGTCCACTATGACCCCAAAATCCTCACCCACAACCACCTAATGGAAGCTATTCAAGGCACCGGGTTCGAAGCTATACTAATAAGCACAGGGGAACACATTAGCAAGATTGAACTTAAAATTGATGGCATTAAGAACGACCAATCCCTTGGTGCCATTGAGCGCTCTCTCCGTGCACTCCCTGGTGTTGAAACCATAGCCATATATCCGGAGATTAACAAAATTGCCATAACTTACATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAACAGGAAATTAACCGATACTTCAAGCTTTTCATATGGAGTCTAGCTTTTACCGTTCCTGTTTTCTTGACATCCATGGTCTTCATGTATATACCTGGAGTTAAACGTGTTTTGGATGTCAAAATTGTCAATATGCTGAATATTGGACTTCTCTTGAGGTGTGACTTTGCTACACCGGTGCAGTTTATCATAGGTAGACGGTTCTATGTTGGGGCATATAGAGCGTTGCGTAAGGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTCTATTCTCTCTATGTTGTGGAAAGATCTGTTTTCTCTCGCCATTTCAAAGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGTAAGTATTTAGAAGTGTTAGCAAAGGGGAAGACATCTCAGGCCATTGCGAAGCTTATGAACTTGACACCTGAGACAGCGACCTTGTTAACTCAAGATGACAAGGGGGATGTTGTTAGTGAAAAACAAATTGATATTCGGTTGATACAAAAGGACGATGTGATCAAGGTTGTCCCTGGTTCAAAAGTAGCATCTGATGGCTTTGTCATATGGGGACAAAGTCATGTCAATGAGAGCATGATAACCGGAGAGGCAAGGCCTGTGGCAAAGAGGAGGGGTGATATGGTGATTGGAGGCACTATGAATGAGAATGGGGTTATGCATGTTAAGGTGACAAGAGTTGGATCCGAGAGTGCTCTCTCCCAGATCGTTCGACTTGTTGAGTCAGCTCAGATGGCTAAAGCTCCAGTTCAAAAACTTGCAGATCATATTTCTAAATATTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCAACATGGCTCTCCTGGTTTCTAGCAGGAAAGTTACATGCATACCCGAAATCTTGGATACCATCCTCCATGAACTACTTTGAGCTTGCACTTCAGTTTGGTATTTCGGTCATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACTGCTGTTATGGTTGGTACTGGCGTTGGTGCAACACAAGGTGTTCTGATCAAAGGGGGCCAAGCACTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGACAAGACAGGAACACTCACAGTTGGGAAGCCAGTGGTTGTAACAACAAAACTCTTCAAAAAGATGTCAATTAAAGATTTCTACGAATTTACTGCTGCAGCAGAGGTGAACAGCGAACATCCAATCGCTAAGGCCATTGTTGAGCACGCCAAGAAGATCACAGAAGAACAAAATCATTCCTGGCCAGTAGCACACAACTTTGTTTCTGTTTCAGGTCATGGTGTAAAGGCCATTGTTCTGAACAAGGATATATTGGTTGGGAATAAAAAGATGATGCTGGATCATAACATAACCATTTCAGCAGATGCTGAAGAAATACTAGCAGAAGCTGAAAGCCTGGCTCAAACTGGGATTTTAGTATCCATGGATGGAGAAGTCGCTGGAGTTTTGGCTGTCTCAGATCCATTGAAACCTGGCGCCAATGAAGTTATTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACAGGTGATAACTGGGGTACTGCCAATTCCATTGCCAGACAAGCCGGTATTGAAACTGTCATAGCAGAGGCTCAACCAGAGACTAAAGCAACTAAAATAAAAGAACTGCAGGCTTCTGGGTATACGGTGGCAATGGTGGGAGATGGCATCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGAATGGCAATAGGTGCTGGCACAGACATTGCAATTGAGGCAGCTGACATCGTTCTGATGAAGAGCAACTTGGAAGATATAATAATTGCCATTGACCTTGCAAACAAAACCTTCTCTCGTATACGTCTAAACTACTTCTGGGCTTTGGGTTACAATATCTTAGCCATCCCAATTGCAGCGGGCATTCTTTACTCATCCACTAGATTTCGCTTACCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTGGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTTCGAAGCTAAATAACATGGAGATAAATGGTGTAAAGATTGAATAA 2955 0.4403 MGEKLECWECSSSLQCCGNLWPKARYPSMTAVEAGKTVAELEGSESKVVLFSVMGMTCAACAGSVEKTIKRLPGIREAVVDVLNHKAQVLYLPSMVNEERIREAIEDAGFEAKVIEEDSNYTSTQICRIHIRGMTCTSCSSTIESALQSLRGVHKARVALTTEEAEVHYDPKILTHNHLMEAIQGTGFEAILISTGEHISKIELKIDGIKNDQSLGAIERSLRALPGVETIAIYPEINKIAITYIPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGREALRQQEINRYFKLFIWSLAFTVPVFLTSMVFMYIPGVKRVLDVKIVNMLNIGLLLRCDFATPVQFIIGRRFYVGAYRALRKGSANMDVLIALGTNAAYFYSLYVVERSVFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETATLLTQDDKGDVVSEKQIDIRLIQKDDVIKVVPGSKVASDGFVIWGQSHVNESMITGEARPVAKRRGDMVIGGTMNENGVMHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLHAYPKSWIPSSMNYFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVTTKLFKKMSIKDFYEFTAAAEVNSEHPIAKAIVEHAKKITEEQNHSWPVAHNFVSVSGHGVKAIVLNKDILVGNKKMMLDHNITISADAEEILAEAESLAQTGILVSMDGEVAGVLAVSDPLKPGANEVISILNSMKIKSIMVTGDNWGTANSIARQAGIETVIAEAQPETKATKIKELQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYFWALGYNILAIPIAAGILYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPSKLNNMEINGVKIE* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0287 984 SFLD p-type atpase 633 906 IPR044492 -
Vra11g0287 984 CDD P-type_ATPase_Cu-like 292 951 - -
Vra11g0287 984 Gene3D - 196 270 - -
Vra11g0287 984 ProSiteProfiles Heavy-metal-associated domain profile. 201 262 IPR006121 GO:0046872
Vra11g0287 984 Pfam E1-E2 ATPase 432 629 - -
Vra11g0287 984 TIGRFAM TIGR00003: copper ion binding protein 129 190 IPR006122 GO:0005507
Vra11g0287 984 TIGRFAM TIGR00003: copper ion binding protein 51 112 IPR006122 GO:0005507
Vra11g0287 984 CDD HMA 131 190 IPR006121 GO:0046872
Vra11g0287 984 SUPERFAMILY HMA, heavy metal-associated domain 45 118 IPR036163 GO:0046872
Vra11g0287 984 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Vra11g0287 984 SUPERFAMILY HMA, heavy metal-associated domain 197 265 IPR036163 GO:0046872
Vra11g0287 984 CDD HMA 51 113 IPR006121 GO:0046872
Vra11g0287 984 Gene3D - 124 195 - -
Vra11g0287 984 Gene3D - 46 119 - -
Vra11g0287 984 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Vra11g0287 984 Gene3D - 618 912 IPR023214 -
Vra11g0287 984 SUPERFAMILY HAD-like 650 961 IPR036412 -
Vra11g0287 984 Gene3D - 658 734 IPR023299 GO:0000166
Vra11g0287 984 Gene3D - 735 786 IPR023299 GO:0000166
Vra11g0287 984 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Vra11g0287 984 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Vra11g0287 984 PANTHER ATP7, ISOFORM B 20 975 - -
Vra11g0287 984 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Vra11g0287 984 CDD HMA 216 262 IPR006121 GO:0046872
Vra11g0287 984 Gene3D - 419 541 - -
Vra11g0287 984 Pfam haloacid dehalogenase-like hydrolase 647 869 - -
Vra11g0287 984 SUPERFAMILY HMA, heavy metal-associated domain 123 197 IPR036163 GO:0046872
Vra11g0287 984 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 20 975 - -
Vra11g0287 984 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Vra11g0287 984 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Vra11g0287 984 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Vra11g0287 984 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 937 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra11g0287 984 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Vra11g0287 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 643 IPR023298 -
Vra11g0287 984 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vra11g0287 984 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Vra11g0287 984 PRINTS P-type cation-transporting ATPase superfamily signature 780 791 - -
Vra11g0287 984 PRINTS P-type cation-transporting ATPase superfamily signature 802 812 - -
Vra11g0287 984 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Vra11g0287 984 PRINTS P-type cation-transporting ATPase superfamily signature 878 890 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase signature 349 368 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase signature 401 420 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase signature 421 439 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase signature 560 574 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase signature 832 849 - -
Vra11g0287 984 PRINTS Copper-transporting ATPase signature 928 942 - -
Vra11g0287 984 SFLD C1.7: P-type atpase like 633 906 - -
Vra11g0287 984 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 364 964 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0287 Vra-Chr11 2032205 2038855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0287 50 984 Primary Pumps ATPases AT1G63440 72.340 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0287 K17686 - gmx:100817431 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0287 11 2032205 2038855 Vra11g0287 11 2032205 2038855 ECH