Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0282 ATGGATGGAAGAGAAGGTATGGGTTTTTCTGGCGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGGGTTAGTGGGTCTGGTCCTGGAACTGGAACACCCTCTGGGTTCCAACCACCTTCTGGGTTCAGAGCTTTGTCTAATGTCTCATCAAGTTCTACATTCTCATTAGAAGCTAAGCCTCCCTCTCAGTCTCAACCTCAGCCTCAGCGAGGAGGTTTCGGTCATGGTATCAACTTAAGTTCTTCACCTGGCATCAACTTAAGTTCTTCACCTGGCATTAACTTAGGTTCCTCACCTGATGGTGGAGGTGGAAGTGGAGGTGGAGGTGTTGGTGGAATGCCTTCTTCCGGTGACCCTGTGAAAAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGATAGTGGGACTGTTTCCCTGAGACTCTCTCCCTTGTCTGCCACTGCTAATTCCACCCCGGGATCAGGCACTCCCTCAGAGAAACGGCCCAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCTAATTTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCCTTTTCACCACATGTTATCACTGTTGGAGTTGGGGAGGATATTGTAGCAAAGTTATTCTCATTTTCACAGCAGAGGCCAAGGGCTTTGTGCATCTTAACTGGAACTGGTACTGTTTCTTCTGTCACTCTGCGCCAGCCAGCTTCTACTACCATCAGTGCTTCTTATGAGGGCCGATTTCAAATATTATGTTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCACGCAGTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTGCCAGCCTTATAGCTGCAAGCCCAGTTCAGGTGGTAGTGTGCAGTTTTGTATATGCAGGCTCTAAGCCAAAGACTAAACAAGTGATCACTGCTACAAAAGATAACAATGCTGAACCTCAGAGTAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTAATCAAAACTACTCTTCTCCTGCCCCAGGCATGTGGCCTGCTCAATCAAGGCCATTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGGTGA 1134 0.4859 MDGREGMGFSGGSAPYYMQHRGGVSGSGPGTGTPSGFQPPSGFRALSNVSSSSTFSLEAKPPSQSQPQPQRGGFGHGINLSSSPGINLSSSPGINLGSSPDGGGGSGGGGVGGMPSSGDPVKKKRGRPRKYGPDSGTVSLRLSPLSATANSTPGSGTPSEKRPRGRPPGSGRKQQLANLGEWMNSSAGLAFSPHVITVGVGEDIVAKLFSFSQQRPRALCILTGTGTVSSVTLRQPASTTISASYEGRFQILCLSGSYLVAEEGGPRSRTGGMSVSLSSPDGHIIGGGVASLIAASPVQVVVCSFVYAGSKPKTKQVITATKDNNAEPQSSDKLASPASAPPNQNYSSPAPGMWPAQSRPLEVKSAHPHTGIDLTRG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0282 377 ProSiteProfiles PPC domain profile profile. 185 327 IPR005175 -
Vra11g0282 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 190 308 - -
Vra11g0282 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 193 306 IPR005175 -
Vra11g0282 377 MobiDBLite consensus disorder prediction 1 174 - -
Vra11g0282 377 MobiDBLite consensus disorder prediction 139 158 - -
Vra11g0282 377 MobiDBLite consensus disorder prediction 322 352 - -
Vra11g0282 377 Gene3D - 193 322 - -
Vra11g0282 377 MobiDBLite consensus disorder prediction 322 377 - -
Vra11g0282 377 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 377 - -
Vra11g0282 377 CDD DUF296 193 305 IPR005175 -
Vra11g0282 377 MobiDBLite consensus disorder prediction 26 97 - -
Vra11g0282 377 PRINTS AT-hook-like domain signature 122 132 IPR017956 GO:0003677
Vra11g0282 377 PRINTS AT-hook-like domain signature 159 170 IPR017956 GO:0003677
Vra11g0282 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 377 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0282 Vra-Chr11 2006991 2011145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0282 1 377 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.772 7.14e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0282 - - gmx:100795781 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0282 11 2006991 2011145 Vra11g0282 11 2006991 2011145 ECH
Vra11g0282 11 2006991 2011145 Vra7g3501 7 54301422 54306142 PCT