Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0280 ATGGGGAAGGGAAAACCTAGAGCTGTGGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTAGCATCCTCAACTATACCTGCAGGGCCTGTGTATTACCCTACCGAGGATGAATTCAAGGATCCTTTGGAGTATATTTATAAGATTAGACCTGAGGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCGAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTAGACGCTTTTACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCTTCGTGTGACTCCAAGACCTTTGACTTGGAGTACTCTAGGTTTCTGAAGGATCACTGTAGTAAGAAGTCCAGGAAAAGGGTGGTGTTCGAGGGGGCGGAGCTGGACTTGTGTACGCTATTCAATGCTGTGAAGCGGTATGGTGGTTATGATAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCTCGGTTTGTCAGGTCCAGTGGCAAGATTTCGGATTGTGCTAAGCATGTCTTGTGTCAGTTGTACCGTGAACACTTGTATGATTATGAGAAATTTTATAACCAGATGAATCAAGGGACAGACCAGAGTTGTAAGAAAAGCTTGTACGAGGAGCACAAGAGTGATTGTGGGGTGAAACCTTTGGTGTCGAAGAGGATTCACAAGAGTGTTGATTGTTTAAAACTGAAGGATAGTAAAGTGCAAGGAGAAGATCATGATCAGATTTGTGAACAATGTAAAAGTGGTCTGCATGGGGAACTAATGCTTTTGTGTGACAGGTGTGATAAGGGATGGCATACATATTGTCTTTCCCCACCATTGAAGCAAATTCCAATGGGTAATTGGTATTGTTTCAACTGCTTGAATTCTGATCGGGACAGCTTTGGTTTTGTGCCTGGGAAGCACTATTCATTGGAAGCTTTTAGACGTAAAGCTGATCTGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGGGTGCAAATAGAGAAAAAATTTTGGGATATTGTGGAGGGTTTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGATTTGGATACATCTGTTTACGGGAGTGGTTTTCCACGTGTAGCTGATAAAAAACCAGAATCAATTGATGACAAATTATGGGAAGAATACTCAACTAACCCGTGGAATCTTAATAACCTGCCTAAGTTGAAAGGTTCAATGCTCCGAGCTGTTCATCACAATATCACCGGTGTCATGGTACCCTGGCTTTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAATCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTACTTTTTCAGCTTGTTACTATGCTGAACCCATCTGTATTGCAAGAAAATGGAGTTCCTGTCTACAGTATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAGGTCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCTGTCAATTTTGCTCCTGCTGATTGGCTACCACATGGTGCTTTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTATCTCACGAGGAGCTTCTTTGTGTAGTAGCCCAGTTTGGTGAAGTTGACGGCAGGGTGTCTTCTTATTTGAAGAACGAATTGTTGAGAATATCAGTTAAGGAAAAATCTCGAAGAGAGAAACTTTGGAAAAATGGTATCATTAAGTCTTCTCGCATGGCTCCTCGAAAATGTCCCCAATTTGTGGGAACCGAAGAAGATCCAGCATGCATCATATGCCAGCAATATCTCTATCTCTCTGCTGTCGTATGTGGTTGCAGGCCATCGGCTTTTGTTTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTTAAATTGCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGGCCTATTCTATGGACAAATATACTTCTGAGGGAAAAGCTGAGTGTAGAAGTGTGAAAAGGCAGCCTTCATGTCTCAATGGTTTGACCAAAAAGGTAAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTACTGCAATCTAGTACTATTCTTCAAAATGTCTTTTTGCAAGATGCATTTGTTACTGCACTGAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAGGAATTTGCTTCAAGCTCAGGAATGGGCAGAAGGGATAAGACACTGTGTAACAAAAATTGAGTTATGGTTGTGTCATCGAGACAGTAGTGTAAAGAAAGTTCATTTAGAATCCGTTGATGAGTTGCTGAAAGTTAGTCCTGCACCTTGCAATGAGCCTTGTTATCATAAACTGAAGGAGTATGCAGAGGAAGCAAGATTGTTTGTACAGGAGATTGATACTGCTTTGTCAATGTGTTTAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCTTACCCATCTACGTGAAAGAAAATAAGAAATTGGAAGGAAAAATTTCTTCAACAAAGGCATGGCTGGATAGTGTCAGAAACTGTATCTCAGCAAGACACCCTGCTGCACTACATGTTGATGTTCTTTATAAACTAAAAGCAGAGTTTTGGGATCTTCAAGTTCAACTCCCGGAGATAGATGTGCTTCAGAATCTACTAAATGAAGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGACCTATGAATCTCAAGAATGTTAGTCTGCTGCTTAAGGAATGGGAAAATTTTGCAGTTGATGTACCAGAACTCAAGATTCTAAGGCAATACCATTCGGATACTGTTTCATGGGTTTCCCACTGTAATGATGTTTTAGGGAGAGTTCACATGCAAGAAGATCAGCATGATGCAGTTGATAAATTGAATAGTATTTTTGAAGCAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTGGTTGAGGTTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTGTGAAGGCGCATGATTTTAAGATGCCTATGGAATTCATCCAGCAACTGTTGAAGGAGGCCACCATGCTTCAAATTGAGCAAGAGAAACAATTTGTCAATCTATCATGCATGCTTACTGTTGCCATTCCTTGGGAGGAAAGGGCTAGAGAGATGCTTTCACATGGGGCTCCTATTTCGGACTTTGAGGACATTATCAGAGCTTCAGAGAACATATTTGTTATTCTTCCTTCACTTAAAGATGTCAAGGATGCATTATCAGAAGCTAATTCCTGGTTAAAGAATTCAAAACCATATTTCGTCTCTTCTATGCAAACTTCGGATTCTAAGCAGAAAGTTGAGGACTTACAGATGTTGGTATCTCAATCGAAGCATCTTAAAATATCATTTGAAGAAAGAGGAATGCTTGAATTGGTTTTGAAAAACTGCAGAACATGGGAGAATGAAGCATGTTCTGTACTAGATGATGCCCGGTGCTTATTTGAACTGGATAGCTCTCTGCATGAAATAGACAGTGGTTTAATGTGTAACATGGAAGATTTGATTGTAAGAATCCAATCCACCATAGCATCGGGTATATCGCTGGGTTTTGACTTTAGTGAGATTTCAAAACTCCAAGCATCTTGTTCTACGCTGCAGTGGTGCAAAAGGGCCTTGTCTTTCTCCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTATTTCTGGGGCTCTGTTGAAACTATTAATAGGTGGGCTTGAATGGCTTAGGAAGGCATTAGAGGCGATTTCTGGTCCTTACAATTCTAGAAGATCCAAGTTGACTGAGATACAAGCTATTCTTACTGATTATCAGACAATTAATATGACCTTTACAGCAGTAAATATTCAAGTTGAAGATTCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGTGCCAATTTTTTGGTCTAAGTTATAGAGAGCGGTCTTGGTCTTCAATATTGCAGCTCAAGGAGTATGGAGATACCATTGCCTTTGGTTGCTGTGAACTGGATTTGGTTTTATCTGAAGTTAAGAAGGTGGAAAATTGGAAGAAAACGTGCATGGATAAACTAGGAGCTTCAGTGAAAAATGAAAATTCGCTACTTCATGCATTGGAGAAGATGGGACAGACTCTAGATAGATCATTGCTTATGTACGACAAATTGCAAGATATGAAGGAACCAAACCAATGTATGTGCTGCTTTGATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATGCTCAATGTGTTGGACTAACAGAAAAAGACGTAGCCATTGAAAACTACCAGTGCCCATATTGTGAAATTCTAAGGAGTGAATTCCGTTATCAGAATGGAGGTGCTCTACTGAGGTTTAAGAAGAATCGTGTTGAACTGAAAGTTCTTACTGAACTCCTGTCTGAGGCCGAAAATTTTGGATTATGGATTGATGAAAGAGATGTTTTGAGTCAACTTGTTGAGAAAGCCCTTCAATGCAAATCTTTCTTGAAAGAAATTGTAATCCTTGCATCAGCTAATGTTGATCAAGATATTTGCATAATCTCTGAAAAATTGGCCACTGCTGTAAAGGCTAGCAACGTGGCTGTTGTCTATGATCAGCATGATACTTGTGATCTTGAGCTGACTTTGGCAAAAACCTTGTGGAAAGCTCAAGTCAATAGAATATTAAATGGTGTACCAAAGCCCACCGTCCAGCGTATTCAGAAGCATCTGAAGGAGGGACTGGCTATGGGCATATCACCTGAAGATCACTATATGTTGAAAATTTCAAATGTGAATAGCTTAGTGTTGCAGTGGACAGAACTAGCCAAAAAGGTGGCATCGGATTTTGGGGCACTCGGCCTTGATAAAGTTCTTGAACTTGTAGTGGAAGGTGAAAAGTTGCCTGTTGATGCGAATGAGGAACTAAGCTTGTTAAGGGCACGATGCATGCTTTATTGTATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTGTCGTTGTAATGAGTGGTATCACTTCGATTGCATGAAATTGCCGTGCACAAGAGAGGTCTACATTTGTCCCGCGTGTAACCCATGTACGGAAGGATTACCTCCAAACCATGACAGATTAACTAGTGGTAAGTTTGAGGAGCCAAAGACCCCTTCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGCTCCCAGCCTCACTTGCAATACGTTCACTACCAGGGATCAAGATAGTGAACGTTGGTATCTGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGAACTTCGAAGTCTTTCTCCATTTATTTGCATACAAAGATAG 5499 0.4126 MGKGKPRAVEKGVVGPSLSVASSTIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDAFTFPTKTQAIHKLQARPASCDSKTFDLEYSRFLKDHCSKKSRKRVVFEGAELDLCTLFNAVKRYGGYDKVVDGKKWGDVARFVRSSGKISDCAKHVLCQLYREHLYDYEKFYNQMNQGTDQSCKKSLYEEHKSDCGVKPLVSKRIHKSVDCLKLKDSKVQGEDHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLKQIPMGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRRKADLSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVADKKPESIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQSSAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFGADLYQRYHKTAVLSHEELLCVVAQFGEVDGRVSSYLKNELLRISVKEKSRREKLWKNGIIKSSRMAPRKCPQFVGTEEDPACIICQQYLYLSAVVCGCRPSAFVCLEHWEHLCECKTVKLRLLYRHSLAELYDLAYSMDKYTSEGKAECRSVKRQPSCLNGLTKKVKGGSITFAQLATEWLLQSSTILQNVFLQDAFVTALRKAEQFLWAGSEMDSVRDMVRNLLQAQEWAEGIRHCVTKIELWLCHRDSSVKKVHLESVDELLKVSPAPCNEPCYHKLKEYAEEARLFVQEIDTALSMCLNMSELELLYSKACGLPIYVKENKKLEGKISSTKAWLDSVRNCISARHPAALHVDVLYKLKAEFWDLQVQLPEIDVLQNLLNEAESCSAQCHDMLEGPMNLKNVSLLLKEWENFAVDVPELKILRQYHSDTVSWVSHCNDVLGRVHMQEDQHDAVDKLNSIFEAGLSLKIQVDELPLVEVELKKANCREKAVKAHDFKMPMEFIQQLLKEATMLQIEQEKQFVNLSCMLTVAIPWEERAREMLSHGAPISDFEDIIRASENIFVILPSLKDVKDALSEANSWLKNSKPYFVSSMQTSDSKQKVEDLQMLVSQSKHLKISFEERGMLELVLKNCRTWENEACSVLDDARCLFELDSSLHEIDSGLMCNMEDLIVRIQSTIASGISLGFDFSEISKLQASCSTLQWCKRALSFSNCSPSLEDVLEVAEGLSHSSISGALLKLLIGGLEWLRKALEAISGPYNSRRSKLTEIQAILTDYQTINMTFTAVNIQVEDSIGKHKLWQEQVCQFFGLSYRERSWSSILQLKEYGDTIAFGCCELDLVLSEVKKVENWKKTCMDKLGASVKNENSLLHALEKMGQTLDRSLLMYDKLQDMKEPNQCMCCFDDSEDQEFLTCSTCMDCYHAQCVGLTEKDVAIENYQCPYCEILRSEFRYQNGGALLRFKKNRVELKVLTELLSEAENFGLWIDERDVLSQLVEKALQCKSFLKEIVILASANVDQDICIISEKLATAVKASNVAVVYDQHDTCDLELTLAKTLWKAQVNRILNGVPKPTVQRIQKHLKEGLAMGISPEDHYMLKISNVNSLVLQWTELAKKVASDFGALGLDKVLELVVEGEKLPVDANEELSLLRARCMLYCICRKPFDPERMIACCRCNEWYHFDCMKLPCTREVYICPACNPCTEGLPPNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDAPSLTCNTFTTRDQDSERWYLSGIECLRWQNRKPFRRAAKKRVELRSLSPFICIQR* 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0280 1832 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Vra11g0280 1832 SUPERFAMILY Clavaminate synthase-like 368 562 - -
Vra11g0280 1832 CDD ARID 97 185 - -
Vra11g0280 1832 Pfam ARID/BRIGHT DNA binding domain 107 185 IPR001606 GO:0003677
Vra11g0280 1832 MobiDBLite consensus disorder prediction 1751 1765 - -
Vra11g0280 1832 Pfam PHD-finger 243 290 IPR019787 -
Vra11g0280 1832 Pfam PLU-1-like protein 1137 1395 IPR013637 -
Vra11g0280 1832 Pfam PLU-1-like protein 943 1181 IPR013637 -
Vra11g0280 1832 Pfam jmjN domain 29 62 IPR003349 -
Vra11g0280 1832 CDD PHD_RSF1 244 288 - -
Vra11g0280 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1681 1739 IPR013083 -
Vra11g0280 1832 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Vra11g0280 1832 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Vra11g0280 1832 SMART JmjN_1 27 68 IPR003349 -
Vra11g0280 1832 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vra11g0280 1832 SMART bright_3 96 190 IPR001606 GO:0003677
Vra11g0280 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 24 1033 - -
Vra11g0280 1832 SUPERFAMILY FYVE/PHD zinc finger 1690 1743 IPR011011 -
Vra11g0280 1832 MobiDBLite consensus disorder prediction 1751 1778 - -
Vra11g0280 1832 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vra11g0280 1832 SMART cupin_9 381 547 IPR003347 -
Vra11g0280 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1405 1491 IPR013083 -
Vra11g0280 1832 ProSitePatterns Zinc finger PHD-type signature. 1440 1484 IPR019786 -
Vra11g0280 1832 ProSitePatterns Zinc finger PHD-type signature. 1697 1737 IPR019786 -
Vra11g0280 1832 SMART PHD_3 243 289 IPR001965 -
Vra11g0280 1832 SMART PHD_3 1439 1485 IPR001965 -
Vra11g0280 1832 SMART PHD_3 1696 1738 IPR001965 -
Vra11g0280 1832 Gene3D Cupin 259 553 - -
Vra11g0280 1832 SMART ARID_2 92 185 - -
Vra11g0280 1832 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Vra11g0280 1832 Gene3D Cupin 14 123 - -
Vra11g0280 1832 SUPERFAMILY FYVE/PHD zinc finger 238 291 IPR011011 -
Vra11g0280 1832 SUPERFAMILY FYVE/PHD zinc finger 1436 1485 IPR011011 -
Vra11g0280 1832 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Vra11g0280 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 1033 - -
Vra11g0280 1832 SUPERFAMILY ARID-like 78 199 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0280 Vra-Chr11 1974829 1994460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0280 28 92 JUMONJI Transcription Factor Family AT1G08620 56.522 1.53e-09 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra11g0280 PLU-1 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0280 K11446 - gmx:100789512 3264.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1622 7 34696993 34705037 Vra11g0280 11 1974829 1994460 PCT