Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0272 ATGTCTTCTGATCTTTATACTTTTGACATTCCTTTCCCCAGACATTCAGACACAGACAACATGGTCTCCTACGATGCAGATGGAAATCTCATGTTTTTCTCTGATCCTTATTCCTTCCCTTTCCTCACTGCCTCTCCGGTTCATGATGTGGCTAAAGGGAATTTTACCAACTCTCTTCACCCTTCTTTCTTCTCTTATTCTCCTCAGCAAAACCAGAGCCTCTGTCATGCTAACCTGGCGCAGCATGTATCAAATGGCTCAAATATGAAGTCTGAGTTTAGAAATTTCTCTGCTTTGCATGGCTCCGAAGTGACAGGTGAGGAGTGCCAAATGGGTATGGATTACTCCTGCAATCAGCACTTTCTTTCTCAAACTTTTCATGCTTCTTCTGATAGTGCATCAAAGGTAATGCAGAGGAGCTTCAGCTGTAACTCTTTCGGGGTGAAGCCAGGTTTCCCCTTTGAACCTCACCCCGACACTCTCATGGACTCCCCAAATTTTCAATTGCATGCTCTGATTTCCCCTGAAAACAGTTTCTTCACGGGACAAATGAGGAGGGTGTGTAGTACTGGAGATTTACAGAACATGAAAGCAACGGATATGTCTCAAGTGGAGAGCCCCTTGTTGGAGGAAGCATACTTCAAAGTGGGGCGTTACAGTGCCGAAGAAAGAAAAGAAAAAATCTCTAAATACAGAGCGAAGAGAAGCCAGAGGAAGTTCAACAAGATTATCAAGTATGCATGCCGAAAGACGCTAGCCGACAATCGAACCCGCATACGTGGCAGATTCGCTCGCAACGACGAAATCAGCGAGATTCCGAAACCACTTTCTTCAACTTCGACAACAGAAGAATACGAAGACGAATTCTGGGTTGAGTTCATCGAAGGATTAAACGAGGAGGTCATCGGTTAG 912 0.4474 MSSDLYTFDIPFPRHSDTDNMVSYDADGNLMFFSDPYSFPFLTASPVHDVAKGNFTNSLHPSFFSYSPQQNQSLCHANLAQHVSNGSNMKSEFRNFSALHGSEVTGEECQMGMDYSCNQHFLSQTFHASSDSASKVMQRSFSCNSFGVKPGFPFEPHPDTLMDSPNFQLHALISPENSFFTGQMRRVCSTGDLQNMKATDMSQVESPLLEEAYFKVGRYSAEERKEKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDEISEIPKPLSSTSTTEEYEDEFWVEFIEGLNEEVIG* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0272 303 PANTHER CCT MOTIF FAMILY PROTEIN 47 300 - -
Vra11g0272 303 Pfam CCT motif 224 266 IPR010402 GO:0005515
Vra11g0272 303 ProSiteProfiles CCT domain profile. 224 266 IPR010402 GO:0005515
Vra11g0272 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 47 300 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0272 Vra-Chr11 1901993 1904026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0272 220 271 C2C2-CO-like Transcription Factor Family AT5G24930 46.154 2.53e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra11g0272 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0272 - - var:108320314 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0272 11 1901993 1904026 Vra11g0272 11 1901993 1904026 ECH
Vra11g0272 11 1901993 1904026 Vra7g3528 7 54577614 54579779 PCT