Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0270 ATGGGATTTCCAGTCGGCTACACAGACTGGGTGCTACCCAAGCTGCTTCTTCATCTGCTATCCCTATTGGGCCTCATCAGAAAACTCCTCACCATCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAACCCGACATTGCGTGGCCCGAGAGGCTGCCGGAATTGCAGTCCGTGTCGGCCGTGCTGATCCGGGAAATCCTGCCGGTGGTCAAGTTCTCGGAGATGGCGAGGGCGGAGGTGGAGGCGGCGGAGAGTTGCGCTGTGTGTCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGCCGCCACATATTCCACAGAGGTTGTCTGGACCGTTGGATGGGGTACGATCAGAGAACGTGTCCCCTCTGTCGGACGCCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTGTGGGCTGCTTCAGGGATCCCTCAATTCTATTACAACGATGAATGA 483 0.559 MGFPVGYTDWVLPKLLLHLLSLLGLIRKLLTILLCYMGFHDFFEPDIAWPERLPELQSVSAVLIREILPVVKFSEMARAEVEAAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPQFYYNDE* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0270 160 SMART ring_2 87 129 IPR001841 -
Vra11g0270 160 CDD RING-H2 87 130 - -
Vra11g0270 160 Pfam Ring finger domain 86 130 IPR001841 -
Vra11g0270 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Vra11g0270 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 157 - -
Vra11g0270 160 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Vra11g0270 160 SUPERFAMILY RING/U-box 71 136 - -
Vra11g0270 160 PANTHER BRH1 RING FINGER PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0270 Vra-Chr11 1896354 1897496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0270 1 151 C3H Transcription Factor Family AT1G63840 58.599 2.91e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0270 K16281 - gmx:102665617 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0270 11 1896354 1897496 Vra11g0270 11 1896354 1897496 ECH
Vra11g0270 11 1896354 1897496 Vra7g3530 7 54600419 54601349 PCT