Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0269 ATGGCTCGACAACTGTGTGAGGATAAATCATCATCCGAATTCTGCTACTCTGATGTGTCATCGGGAAATCCAACGATGCTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCAGCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTTCTTCCTCTTCCAAAACCATGAACGAATCTTCCACCCCTTTCTACCACCGTGACTACAGCAACAAGCCTTCAGATTTCACACCGGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATTGTTGGAGCCCACGATTCGGCCCCGTGGCAAGACGACAACAGCCATAACAGGTTTGACGATTCTTCTTTAAGGTGCGTGTTCCCTTGTGAAGCCAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCCACTATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCACCATCCTGATTTTGTTCCCTCGGGTTCCAGAGATGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGATGGGTATGTGAGTTCTAATTCCAAAGCTGCAAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGTTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCAAAGATAAGTGAGGCGGGAAAGCTTAAATCGTTGAAGAAGCAGTGGGAAGAGGATAACATATGTACTGGTTCCTCGAAGAAGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTCGACAGAAGGTACAAACACTACCGAAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCGGTGGCGGGTAATGGTGCTGCCACAGTGTACTCGGCGTTGGCTCTGAAAGCCATGTCGAGACATTTCAAATGTTTGAAGGATGGGATTTTGGGGCAGATTCAAGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACACCTAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCACCCTTGGAGACCTCAACGTGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGTCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTGTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAGAACAACATAGCTTCCTCAGAGGGTGCTACTGATCCAGACAATGATATAAACTCAAATGTTCAAAACCCTCCTCCACCCCATACAACACGATCAGAGGATCAGAAGCCATCACTGCTTCGAATAGACTCCGAGTGTGCGTCCTCCATCATCAACAACCACACCATAGACAACAAAAACGACCCAAAGAGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCATACACACACCAGTCCCCGGGCATGGTTTCTTTCGGAAGCAATGATCAAAGCGGGAACAGCCAGAGCGGAGTGTCTCTGACACTAGGGTTACAGCAGCATGGAGTCAGCCTAGCTTTCCCGCCACCATCACAGAGTTCACTGTACTACGCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTATTCTCTTTTGGATGCTGAAGGACAAAACCTGCCTTACAGAAATTTAATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 1914 0.4801 MARQLCEDKSSSEFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGSSSSKTMNESSTPFYHRDYSNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNSHNRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSGSRDGFFGKPVSVQQQQMLQDGYVSSNSKAASVYQQGHFLVKNSKYLLPAQDLLNEFCSLDAKISEAGKLKSLKKQWEEDNICTGSSKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNIASSEGATDPDNDINSNVQNPPPPHTTRSEDQKPSLLRIDSECASSIINNHTIDNKNDPKSQEQCFGSVELDFSSYTHQSPGMVSFGSNDQSGNSQSGVSLTLGLQQHGVSLAFPPPSQSSLYYANPRDQIEDCQPVQYSLLDAEGQNLPYRNLMGAQLLHDLAG* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0269 637 SMART HOX_1 396 460 IPR001356 GO:0003677
Vra11g0269 637 MobiDBLite consensus disorder prediction 474 507 - -
Vra11g0269 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 596 - -
Vra11g0269 637 Pfam Associated with HOX 221 343 IPR006563 -
Vra11g0269 637 SMART prehox3 215 345 IPR006563 -
Vra11g0269 637 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677
Vra11g0269 637 MobiDBLite consensus disorder prediction 475 502 - -
Vra11g0269 637 Gene3D - 399 461 - -
Vra11g0269 637 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 9 596 - -
Vra11g0269 637 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677|GO:0006355
Vra11g0269 637 CDD homeodomain 396 457 IPR001356 GO:0003677
Vra11g0269 637 SUPERFAMILY Homeodomain-like 397 463 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0269 Vra-Chr11 1870308 1874311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0269 137 636 Homeobox Transcription Factor Family AT5G41410 48.807 7.68e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra11g0269 POX 4.4e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0269 - - gmx:100803088 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0269 11 1870308 1874311 Vra11g0269 11 1870308 1874311 ECH
Vra11g0269 11 1870308 1874311 Vra7g3532 7 54633153 54637208 PCT