Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0262 ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGATGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGAATTCATCAATCACCACTACACAAAGTGTGGATCATCACCCTCAGTTCAATTATAATTCCAACCAACTAGATCACTTTGGCAACCAAGACAATGTAACAACAAAAGCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGACCATGGGACAACAACAGTAGACACCACCAAACTGTTCCAAGATTCATTGGGTTTGAGCAGTGAAACGTGGAACTTGAGCCAGCACCAAGTCCATCATGGTATTCCTCCTCAAGCAGCACCGGCAGCAGCAACTTTTACAGCGGCTACAGTGATTGATACTACGAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGAGGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAAGACAGCTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCATCTTTACATTCTCTCCGTCGCCGCTGCACCGTAGCAACCATGATCATTTCCGAGAAGAACCGTCGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATCTGGCGAAGCACCCAGAGATTGATGTTCCAAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAGTCCAGGGAGTACGTGCGCGAGACATTTGCTTGGATGCATTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGAACATACCTCAACCTTCCCTCGGAAATCGTACCCGCCACTCTTAAGAAGCAGGCCAAGCCCGCCGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCAAGGGGCCCACCTCGCTTTGAGGGAGAGAGGAGATTCGGTGGTGATAGAGATGGATACCGTGGGGGTCCCCGGGGACCTGGTGGTGACTTTGGGGAGAAAGGTGGAGCTCCTGCTGACTACAGACCTTCATTTGGGGGTCCCGGTGGAAGGCCTGGTTTCGGTCGAGGTGCTGGTGGTTATGGGGCACCAACAAGTTCAAACACTCCTTAA 1533 0.4781 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVNSSITTTQSVDHHPQFNYNSNQLDHFGNQDNVTTKAAVQETIFSSTCPLFMFDTSSLDHGTTTVDTTKLFQDSLGLSSETWNLSQHQVHHGIPPQAAPAAATFTAATVIDTTNYLPPLIENVENMVPNMEVQGCSIEEEGEMALECLRRQELNEWVENQQHCPSFLFWDSVERQLGGEELAPNTSNIGTNTLSPFPSSLHSLRRRCTVATMIISEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGEKGGAPADYRPSFGGPGGRPGFGRGAGGYGAPTSSNTP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0262 510 CDD SANT 69 112 IPR001005 -
Vra11g0262 510 Gene3D - 6 66 - -
Vra11g0262 510 MobiDBLite consensus disorder prediction 422 510 - -
Vra11g0262 510 CDD SANT 17 61 IPR001005 -
Vra11g0262 510 Pfam Plectin/S10 domain 334 425 IPR005326 -
Vra11g0262 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra11g0262 510 PANTHER 40S RIBOSOMAL PROTEIN S10 253 508 IPR037447 -
Vra11g0262 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra11g0262 510 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra11g0262 510 Gene3D - 68 138 - -
Vra11g0262 510 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra11g0262 510 MobiDBLite consensus disorder prediction 443 459 - -
Vra11g0262 510 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 253 508 - -
Vra11g0262 510 Gene3D - 332 435 IPR036388 -
Vra11g0262 510 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra11g0262 510 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra11g0262 510 SMART sant 13 63 IPR001005 -
Vra11g0262 510 SMART sant 66 114 IPR001005 -
Vra11g0262 510 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0262 Vra-Chr11 1815753 1821772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0262 1 304 MYB Transcription Factor Family AT1G63910 51.397 4.18e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g0262 S10_plectin 4.2e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0262 K09422 - gmx:100797787 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0262 11 1815753 1821772 Vra11g0262 11 1815753 1821772 ECH