Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0257 ATGGCGAAAGAACTTGAGAGGAAAGCGAAGGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTCGATTTCTACTCCGAAGCCATAAAACTAGATCCAAAGGACGCTAATCTCTTCGCTGACAGAGCACAAGCCCATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCCAACAACGCCATCATGTTAAACCCTTCCTTGTCCAAGGCCTATCTTCGCAAAGGGACCGCTTGTATAAAGCTAGAAGAATATCACACTGCCAAGTTAGCACTTCAAGACGGCGCCGCTTTTGCGCCGGACGATTTGAGATTCTCCAAGTTGATTCAACAATGTGACCGCTTTATCTCAGAGGAATCAAATGATTTTGTTAGCACCATATCGTCAAGTGGTCCCCACTTGAACAATACAAATGACGGGGTGACTAAAGAAGCTGAGGAAGACAGTTTGGTATCCCAAATCAAGGAAGTCACAATAAACAGACCAAAATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAGGGAATATCTGCAAAAGATCTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTAACTATTGATGTTCCTGGCCAAGATGCCTATCGTTTCCAACCTCGATTGTTTGGGAAGATAGTTCCCAACAACTGCAAAGTTGCGGTATTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATACACTACCCACTAAAATAAACATGCCTATAGTTCAATCTCAAAGGCCTTCATACCCATCATCAAAAGCAAAGACAAAAGATTGGGATAAGTTGGAAGCTCTAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCAGGTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCGTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGATGGCTTGGAGCTGAAAAAATGGGAGTATTAA 1092 0.4231 MAKELERKAKEAFFDDDFALAVDFYSEAIKLDPKDANLFADRAQAHIKLNAFTEAVSDANNAIMLNPSLSKAYLRKGTACIKLEEYHTAKLALQDGAAFAPDDLRFSKLIQQCDRFISEESNDFVSTISSSGPHLNNTNDGVTKEAEEDSLVSQIKEVTINRPKYRHEYYQKPEEVVVTIFAKGISAKDLVVDFGEQILSVTIDVPGQDAYRFQPRLFGKIVPNNCKVAVLSTKIEIRLAKAEAINWTSLEYSKDTLPTKINMPIVQSQRPSYPSSKAKTKDWDKLEALVKKEEKEEKLDGDAGLNKLFRDIYQNADEDMRRAMSKSFVESNGTVLSTDWKEVGSKKVEGSPPDGLELKKWEY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0257 363 Gene3D - 163 254 IPR008978 -
Vra11g0257 363 ProSiteProfiles SGS domain profile. 272 363 IPR007699 -
Vra11g0257 363 ProSiteProfiles CS domain profile. 162 251 IPR007052 -
Vra11g0257 363 CDD p23_CS_SGT1_like 168 251 - -
Vra11g0257 363 SUPERFAMILY HSP20-like chaperones 161 258 IPR008978 -
Vra11g0257 363 Pfam CS domain 166 241 IPR007052 -
Vra11g0257 363 Gene3D Tetratricopeptide repeat domain 1 123 IPR011990 GO:0005515
Vra11g0257 363 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Vra11g0257 363 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Vra11g0257 363 SMART tpr_5 36 69 IPR019734 GO:0005515
Vra11g0257 363 SMART tpr_5 70 103 IPR019734 GO:0005515
Vra11g0257 363 SMART tpr_5 2 35 IPR019734 GO:0005515
Vra11g0257 363 PANTHER PROTEIN SGT1 HOMOLOG A 1 363 - -
Vra11g0257 363 MobiDBLite consensus disorder prediction 343 363 - -
Vra11g0257 363 Pfam SGS domain 281 361 IPR007699 -
Vra11g0257 363 PANTHER PROTEIN SGT1 HOMOLOG 1 363 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0257 Vra-Chr11 1776657 1780870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0257 1 94 U-box Gene Family AT3G07370 30.851 1.54e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0257 K12795 - gmx:100784022 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0257 11 1776657 1780870 Vra11g0257 11 1776657 1780870 ECH