Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0249 ATGGACAATAGGAACATTTTGTTATCGGCGCTGAGTGTTGGGGTGGGTGTAGGAGTGGGGATTGGGTTGTCCTCCGGACAAGGCCTTTCCAAATGGGGTGTTAATGGTAATTCTTCCTCAGACGGTGTTACTCCGGAGAATCTTGAACAGGAAATGCTACGAATGGTCGTGGATGGCAGAGAAACCAATGTCACTTTTGATCAATTCCCTTTTTATCTTAGGGAGCAGACAAGGGTGACGCTAACAAGTGCTGCTTATGTCCATTTGAAGAATGCGGAGGTTTCCAGACATACACGGAATCTTGCTCCTGCAAGCCGGACTATCATGCTTTCAGGGCCAGCGGAGCTTTATCAACAAGTGCTTGCCAAAGCTTTAGCCCACTACTTTGAGGCGAAGTTGCTTCTGTTAGATCTTACTGACTTTTCATTGAAGATTCAGAATAGATATGGTTATGCCAACAATCGATCGATTTTCAAAAGGTCTACCTCAGAGACAACTTTGGAGCGGATATCCGACCTATTTGAATCATTTTCAATCTTTTCACAAAAAGAAGAACTTAAAGGGACAACCCACAGGCAACCCAGTGGAGTGGACCTTCGGTCAACGGAATCTGAAAGATTGTATAATCCTTCTAAGATTCGTAGGAATTCGTCTGCCTCTGCAAATATCAGTAACCTTGCTTTGCAAAGCAATCCTACAAATTCAGCTTCAGCCCCTCAGAAGAACATAACCAACTGGCCTTTTGATGAAAAGCTTCTTGTACAAACTCTTTATAAGGTTCTAGTTTATGTATCAAAAACCTATCCTATTGTTCTATATTTGCGGGATGTTGACAAGTTATTGTATAGATCACAACGGATATATAACCTATTCCAGAAAATGTTGAATAAACTGCATGGACGAATTTTGATTCTTGGTTCACGAGTTTTTGATTCTGGAAGTGACTACAAAGAAGTGGATGAAAGACTTTCTTCCGTCTTCCCCTACAACATAGAAATCAGTCCCCCAGAAGATGAATGTTATAATGTCAGCTGGAAGTCTCAATTTGAAGAGAACATGAAGACGATACAGACTCAGGATAATAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTTATTGTGATGACCTGGGTTCCATCTGTGTGGCAGATACAATGGCTTTCAGTGACCATATAGAAGAGATCGTCGTGTCAGCAATTTCTCATCACTTAATGAATAACATAGATCCTGAATACAGGAATGGCAAACTAGTTATTCCTTGTAGCAGCTTGTCCCATGCATGGGGTATATTCCAGGAGGGGAAATTCAGTACAAGAGATACATTAAAATTAGAAGCCCAGACAGTTACGACTGAGCCGAGAGAAGAAGCTGTTGTGATGCCAGAAACAGTGTCAGAAAAACCTGCTCCTGAAATAAAGGCTGAAGCAGATACATCAATTTCAGTGGGAACAACTGACGGTGAAAATGCAGTTCCTGCATCAAAAGTTGAAGTTCCCCCTGACAATGAGTTTGAGAAGCGAATAAGGCCTGAAGTAATACCAGCAAACGAAATTGGTGTAAAATTCTCTGATGTTGGTGCCTTAGATGAGACCAAAGAATCGCTTCAAGAACTAGTTATGCTTCCTCTACGACGGCCAGACCTTTTCCGCGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTTTTTGGACCTCCTGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAAGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCGTCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGGTTTGTTCACTCTGGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTTGATAGTATGCTGGGGCAACGTACCAGAGTTGGAGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGACACTTTGGGATGGACTAATGACAAATCCAGCGGAGCGTATCCTTGTTCTTGCTGCGACCAATAGGCCGTTTGACCTGGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATAATGGTGGGGATGCCAAGCGTGGAGAACAGGGAAAAAATTTTGAGGACTCTTTTGCGAAGAGAAAAGGTGGACAAGAAATTTGATTTTAAGGAACTCGCTACTATGACAGAAGGATACAGCGGAAGTGATCTCAAGAACTTGTGTACAACTGCTGCTTACAGACCTGTTAGAGAGTTAATTCAACAAGAGAGACTAAAAATGCTGGAGAAAAGGCAGAAAGGTGTTGAAGAACAGAATAACAATGTCCAAGATGCTTTGGAAGCAAAAGAGGAAGTTAAACAGGAAAGAGTAATTTCCCTTAGACCTTTGAACATGCAAGACTTCAAAGAGGCTAGGAGTCAGGTTTCCGCAAGCTACGCAGCTGAGGGGGCTGGAATGAGTGAGTTAAAGCAGTGGAACGAAATGTATGGGGAAGGAGGTTCAAGGAAGCGAGAGCAATTATCTTACTTCCTGTGA 2523 0.4241 MDNRNILLSALSVGVGVGVGIGLSSGQGLSKWGVNGNSSSDGVTPENLEQEMLRMVVDGRETNVTFDQFPFYLREQTRVTLTSAAYVHLKNAEVSRHTRNLAPASRTIMLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQNRYGYANNRSIFKRSTSETTLERISDLFESFSIFSQKEELKGTTHRQPSGVDLRSTESERLYNPSKIRRNSSASANISNLALQSNPTNSASAPQKNITNWPFDEKLLVQTLYKVLVYVSKTYPIVLYLRDVDKLLYRSQRIYNLFQKMLNKLHGRILILGSRVFDSGSDYKEVDERLSSVFPYNIEISPPEDECYNVSWKSQFEENMKTIQTQDNRNHIMEVLAANDLYCDDLGSICVADTMAFSDHIEEIVVSAISHHLMNNIDPEYRNGKLVIPCSSLSHAWGIFQEGKFSTRDTLKLEAQTVTTEPREEAVVMPETVSEKPAPEIKAEADTSISVGTTDGENAVPASKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTVTSKWFGEDEKNVRGLFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTLWDGLMTNPAERILVLAATNRPFDLDEAIIRRFERRIMVGMPSVENREKILRTLLRREKVDKKFDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIQQERLKMLEKRQKGVEEQNNNVQDALEAKEEVKQERVISLRPLNMQDFKEARSQVSASYAAEGAGMSELKQWNEMYGEGGSRKREQLSYFL* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0249 840 Pfam AAA+ lid domain 716 751 IPR041569 -
Vra11g0249 840 SMART AAA_5 558 695 IPR003593 -
Vra11g0249 840 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 840 - -
Vra11g0249 840 Gene3D - 521 782 IPR027417 -
Vra11g0249 840 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Vra11g0249 840 Coils Coil 754 784 - -
Vra11g0249 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 806 IPR027417 -
Vra11g0249 840 Gene3D - 694 776 - -
Vra11g0249 840 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Vra11g0249 840 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 840 - -
Vra11g0249 840 CDD AAA 560 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0249 Vra-Chr11 1706428 1712352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0249 474 756 Calmodulin-binding Proteins AT3G56690 35.052 9.13e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0249 - - gmx:100783137 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0249 11 1706428 1712352 Vra11g0249 11 1706428 1712352 ECH
Vra11g0249 11 1706428 1712352 Vra7g3424 7 53546081 53551899 PCT