Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0248 ATGGGAAACTGTAACAGCGAAGCCTCTTCCCAAATGCAGCCATATTCCGACCATCACCATGATCACCCTCAACCTTCCAACGGCATCAGCGTTCTACCTCCGAATTCCAAGCCCTCCGTGGGTCGGGTCCTGAACCGGCCCATGGAGGACGTCCGTTCCACCTATATATTCGGGCGTGAACTGGGCCGCGGGCAATTCGGCGTCACCTACTTAGTGATCCACAAGCACACTAACGAACAATTAGCGTGCAAATCCATTGCCACGCGCAAACTCGTCCACCGAGACGACTTGGATGACGTCCGCCGCGAGGTGCAGATCATGCACCACCTCACCGGGCACCGCAACATTGTCGAGCTCAAGGGAGCCTACGAGGATCGACATTCTGTCAATCTTGTCATGGAGCTCTGCGCCGGTGGCGAGCTCTTCGACCGGATCATCGCCAAGGGCCATTACTCCGAGCGCGCAGCTGCCGACCTCTGCCGCCAGATCGCCACGGTGGTGCACGACTGCCACACCATGGGAGTGATGCACAGGGATCTGAAGCCGGAGAACTTCTTGTTCCTCGGTAAGGAGGAAAACTCGCCGCTTAAGGCCACGGACTTCGGTCTCTCCGTGTTCTTCAAGCCTGGCGATGTGTTTAAGGACCTTGTTGGGAGTGCGTATTATGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTGTTCATTTTGCTCTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTAATGCTATTCTTCGTGGACGTATTGATTTTGAATCAGATCCTTGGCCTTCCATTTCAAGCAGTGCGAAAGATTTAGTCAAGAACATGTTACGAGTTGATCCCAAAAGCAGGCCCTCGGCAGTTGAAGTCCTTAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAACCTCTAGATATTGCTGTTTTAACCAGAATGAAGCAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAATGGAATAATCACTTTTGAAGAGTTGAAAACTGGTCTGCCAAAACTGGGTACTAAGATTTCCGAGTCTGAAGTAAAGCAGTTAATGGAAGCGGCTGATGTAGACGGAAATGGGACCATTGATTACATTGAATTTATAACAGCTACCATGCATATGAATAGAATGGAAAGAGAGGACCACTTATATAAAGCTTTTGAATATTTTGACAAGGATAGAAGCGGGTACATCACTATGGAAGAGTTGGAATCTGCCCTTAAAAAATATAATATGGGTGATGAGGAAACAATAAAGGAAATCATTTCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGAGGAGTTTGTAGCCATGATGAGGAAAGGCAATCCAGATTTGGTAACCAAACGTCGCAAATAA 1515 0.4706 MGNCNSEASSQMQPYSDHHHDHPQPSNGISVLPPNSKPSVGRVLNRPMEDVRSTYIFGRELGRGQFGVTYLVIHKHTNEQLACKSIATRKLVHRDDLDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAADLCRQIATVVHDCHTMGVMHRDLKPENFLFLGKEENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILFILLSGVPPFWAENEQGIFNAILRGRIDFESDPWPSISSSAKDLVKNMLRVDPKSRPSAVEVLNHPWMREDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNNGIITFEELKTGLPKLGTKISESEVKQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDRSGYITMEELESALKKYNMGDEETIKEIISEVDTDNDGRINYEEFVAMMRKGNPDLVTKRRK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0248 504 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Vra11g0248 504 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0248 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 497 - -
Vra11g0248 504 CDD STKc_CAMK 55 312 - -
Vra11g0248 504 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Vra11g0248 504 SUPERFAMILY Protein kinase-like (PK-like) 52 322 IPR011009 -
Vra11g0248 504 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Vra11g0248 504 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Vra11g0248 504 ProSiteProfiles EF-hand calcium-binding domain profile. 427 461 IPR002048 GO:0005509
Vra11g0248 504 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0248 504 MobiDBLite consensus disorder prediction 1 45 - -
Vra11g0248 504 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Vra11g0248 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vra11g0248 504 SMART efh_1 466 494 IPR002048 GO:0005509
Vra11g0248 504 SMART efh_1 359 387 IPR002048 GO:0005509
Vra11g0248 504 SMART efh_1 431 459 IPR002048 GO:0005509
Vra11g0248 504 SMART efh_1 395 423 IPR002048 GO:0005509
Vra11g0248 504 SUPERFAMILY EF-hand 351 492 IPR011992 -
Vra11g0248 504 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Vra11g0248 504 Gene3D - 321 495 - -
Vra11g0248 504 Pfam Protein kinase domain 57 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0248 504 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Vra11g0248 504 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 31 497 - -
Vra11g0248 504 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Vra11g0248 504 Pfam EF-hand domain pair 360 420 IPR002048 GO:0005509
Vra11g0248 504 Pfam EF-hand domain pair 430 492 IPR002048 GO:0005509
Vra11g0248 504 Gene3D Transferase(Phosphotransferase) domain 1 141 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0248 Vra-Chr11 1698118 1704825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0248 41 504 EF-hand Containing Proteins AT4G23650 80.860 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra11g0248 Pkinase 3.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0248 K13412 - gmx:100817321 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0248 11 1698118 1704825 Vra7g3421 7 53520228 53525930 PCT