Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0239 ATGCAACGCATTTTCTGTTTGGTGTCTCTGTTTTCTCTGTTTTTCCTCTTTCTGTCCCGACCCAATGCAGAACCCACAGAAGACAAGCAAGCACTGCTTCATTTAGTGGAAAAGTTGGCTCCTTCAAGACCCCTCAATTGGAACGCAACCTCTTCTCCTTGTACCTCTTGGACCGGTGTAACCTGCAACTCTGACCACTCACGAGTTATAGCCATTCACTTGCCAGGCTTTGGCTTTCACGGAACCATTCCTCCCAATACGTTAAGCCGTGTTACGTGCTTGCAGACACTCAGTCTCAGATCTAACTCCATAACCGGTCCTCTCCCTTCTGATCTCTCCAACCTCTCAGACCTTTCCTTTCTCTACCTTCAGTTCAACAATTTCTCTGGTCCCTTACCTGACTTCTCTGTCTGGAGTAACCTCTCTGTTGTCGACCTGTCCAATAACTGTTTCACCGGCACCGTTCCTCTCTCCCTCTCCAATTTGACTCACCTAACTGCCATCAATCTCGCCAACAACTCGCTTTCTGGCCAAATCCCTCTTTCTCTCCACAGGTTTCCAGACTCGGCTTTCGTGGGAAACAATGTCTCTCTCCAGACAGTTTCACATTCCAAATCTGCGAAACACGGTGAAACTGCGCTGTTTTGGGTTGTTATTGCTGCTGCTTCTGTTGCTCTTGCAGCTTTCTTTGTTTTTATCTTTGTGTGCTGGTCCAGAAAGAAGAAAGGAGATTCCTTTACTCGGAAGATGCTGAAGGGAGATATGTCTCCGGAAAAAGTAGTTTCCAGGGACCTTGATGCGAATAATAAGATCTTTTTCTTTGAGGGGTGTAGCTATGCGTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTTGGGAAGGGGACGTTTGGTGCTGCATATAAGGCTGCGTTGGAGGATGCTACCACTGTTGTTGTGAAGAGGCTGAAGGAAGTGGCTGTTGGAAAGAGGGACTTTGAGCAGCACATGGAGGTTGTGGGGAATCTCAAACATGAGAATGTGGTTCAGCTAAAGGGGTATTACTATTCCAAAGATGAGAAACTCATGGTCTATGATTACTACACTCAAGGGAGCCTCTCTACTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGAGAGTAGAATGAAAATTGCTCTGGGTGCTGCACGAGGCCTTACTCGCATCCATTGCGAGAATGGGGGGAAGCTTGTGCATGGCAACATCAGATCCTCAAATATCTTTGTGAATACTACACAATATGGTTGCATATCTGATCTTGGCCTGGCAACCATCATGAGTTCAGTTGCCATACCCATCTCACGAGCCGCTGGTTACAGAGCACCAGAAGTCACAGACACTAGAAAAGCAACGCAGCCTGCTGATGTTTACAGTTTTGGTGTGGTGTTGCTGGAGATTCTCACTGGGAAATCCCCTGTATACACCACTGGTGGCGACGAGATTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTCAGAGAGGAGTGGACAGCAGAAGTGTTCGACTTGGAGCTGATCAGATATCCCAACATAGAGGAAGAGATGGTTGAAATGTTACAGATAGCCATGTCTTGCGTGGTGAGGGTTCCTGATCAGAGGCCTAAGATGTTGGAAATTGTAAAAATGATAGAAAATGTGAGGCAGATTGATATAGCCACCATGACTCAGCAACCATCATCTGAGAACTAA 1728 0.4676 MQRIFCLVSLFSLFFLFLSRPNAEPTEDKQALLHLVEKLAPSRPLNWNATSSPCTSWTGVTCNSDHSRVIAIHLPGFGFHGTIPPNTLSRVTCLQTLSLRSNSITGPLPSDLSNLSDLSFLYLQFNNFSGPLPDFSVWSNLSVVDLSNNCFTGTVPLSLSNLTHLTAINLANNSLSGQIPLSLHRFPDSAFVGNNVSLQTVSHSKSAKHGETALFWVVIAAASVALAAFFVFIFVCWSRKKKGDSFTRKMLKGDMSPEKVVSRDLDANNKIFFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGKRDFEQHMEVVGNLKHENVVQLKGYYYSKDEKLMVYDYYTQGSLSTLLHGKRGEDRVPLDWESRMKIALGAARGLTRIHCENGGKLVHGNIRSSNIFVNTTQYGCISDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPADVYSFGVVLLEILTGKSPVYTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMLEIVKMIENVRQIDIATMTQQPSSEN* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0239 575 Gene3D Ribonuclease Inhibitor 25 207 IPR032675 -
Vra11g0239 575 SUPERFAMILY Protein kinase-like (PK-like) 292 556 IPR011009 -
Vra11g0239 575 Gene3D Transferase(Phosphotransferase) domain 1 364 573 - -
Vra11g0239 575 ProSiteProfiles Protein kinase domain profile. 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0239 575 SUPERFAMILY L domain-like 40 189 - -
Vra11g0239 575 Gene3D Phosphorylase Kinase; domain 1 257 362 - -
Vra11g0239 575 PANTHER OS05G0588300 PROTEIN 18 567 - -
Vra11g0239 575 ProSitePatterns Protein kinases ATP-binding region signature. 294 325 IPR017441 GO:0005524
Vra11g0239 575 Pfam Protein tyrosine and serine/threonine kinase 292 555 IPR001245 GO:0004672|GO:0006468
Vra11g0239 575 PANTHER PROTEIN, PUTATIVE-RELATED 18 567 - -
Vra11g0239 575 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0239 Vra-Chr11 1624094 1627199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0239 22 575 Receptor kinase-like Gene Family AT4G23740 60.331 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra11g0239 PK_Tyr_Ser-Thr 7.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0239 - - gmx:100783234 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0239 11 1624094 1627199 Vra11g0239 11 1624094 1627199 ECH
Vra11g0239 11 1624094 1627199 Vra7g3412 7 53425059 53429394 PCT