Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0238 ATGACTACGCCACCCACCAAGTACACTCACACTCACCACACCAAACTACTCACACTCACTCACCACCCACCAAAAAACCCATGTCCCAGACTTGTCAGAATAACCGTCACAGACACTGACGCCACCGACTCCTCCAGCGACGAAGAACAAACCTTTCACTCTTCCAACCGCCACTCTTCCAAGCGCCAACGCCAACGCCATACCAAATTCATCAACGAGATTTCCATCGAGCCCTGCGCCGCCGAGAACGACGCCGTATTTTCCGGGAAGAGAGTTCGGAGACGGAGCGTGGTGGGCAAAGGTAGAGTTGCAGAGACTCCGGGCGGGTCGACCGGAAAGAAATTCCGCGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCGGAGATACGAGACCCGTCTCGACGCGTGAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCACCTGCCACGTGGCACAACAAAGACCAGATGCCGGTTTCCAACGGTTACGCCTCCATTGAGGAAACTCAGAACAAAAACCTGTTTTCTCCTACCTCCGTACTTCATTCTTGCTCTTTGTCTGAGGAAGCAGAATCCGTGACCGGCAAAGACGATGACTTCTCCTCCGTGTCTGAGAGTTCCAAGGCAAAAGCTGAGTCACTGTTTCCGGTTCCGATTCCGAGCGAACTAAAATTTGACTTCGAAGACTGTTTGGCGGCGCCGGACGTGTACGGCGATTTGGACAGCGCTGCGGCGGCTGAGAGTGTGTTGTTCTCCGACGATGACTGGCCTGGGGTGTTTCTCACTGCTTGTGATGATTTCGGATTAAAAAGTTGGCATGCAGACAGAAATCATGACTTTTTCCAAGATATCGACGATTTATTCGTCTCCGATCCTCTTCTTGCTCTTTGA 969 0.5315 MTTPPTKYTHTHHTKLLTLTHHPPKNPCPRLVRITVTDTDATDSSSDEEQTFHSSNRHSSKRQRQRHTKFINEISIEPCAAENDAVFSGKRVRRRSVVGKGRVAETPGGSTGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWHNKDQMPVSNGYASIEETQNKNLFSPTSVLHSCSLSEEAESVTGKDDDFSSVSESSKAKAESLFPVPIPSELKFDFEDCLAAPDVYGDLDSAAAAESVLFSDDDWPGVFLTACDDFGLKSWHADRNHDFFQDIDDLFVSDPLLAL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0238 322 SUPERFAMILY DNA-binding domain 114 170 IPR016177 GO:0003677
Vra11g0238 322 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Vra11g0238 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 5 319 - -
Vra11g0238 322 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Vra11g0238 322 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Vra11g0238 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 319 - -
Vra11g0238 322 CDD AP2 113 170 IPR001471 GO:0003700|GO:0006355
Vra11g0238 322 MobiDBLite consensus disorder prediction 1 66 - -
Vra11g0238 322 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Vra11g0238 322 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Vra11g0238 322 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0238 Vra-Chr11 1614506 1616528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0238 1 322 AP2-EREBP Transcription Factor Family AT4G23750 40.278 9.10e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0238 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0238 - - vra:106777252 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0238 11 1614506 1616528 Vra7g3411 7 53414705 53416337 PCT