Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0230 ATGTCCACGACTGCAACTACGACATCAGAAGAAGTGAGCAGCAACGAGTGGGAAGTGATACACATGAGCGAGCAAGAAGAGGATCTGATTCATAGGATGTACAACCTGGTCGGAGACAAGTGGAATTTGATAGCGGGTCGCATTCCGGGTCGTAAAGCAGAAGAGATAGAGAGATTCTGGATTATGAGACACACTCACACTTTCTCTGTTACAAAAAATCAAAGTAAAGCCAAAGATTCTTGA 243 0.4403 MSTTATTTSEEVSSNEWEVIHMSEQEEDLIHRMYNLVGDKWNLIAGRIPGRKAEEIERFWIMRHTHTFSVTKNQSKAKDS* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0230 80 Pfam Myb-like DNA-binding domain 23 61 IPR001005 -
Vra11g0230 80 Gene3D - 22 80 - -
Vra11g0230 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 4 75 - -
Vra11g0230 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Vra11g0230 80 CDD SANT 22 60 IPR001005 -
Vra11g0230 80 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 4 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0230 Vra-Chr11 1550064 1552983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0230 22 60 MYB Transcription Factor Family AT5G52600 56.410 6.42e-12 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra11g0230 Myb_DNA-binding 6.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0230 K09422 - gmx:100814431 131.339