Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0229 ATGGACGGAATGCAAGAAAGAAACTCACAGCTTGGAACTGATATTGGTTCCTCCTTATCAAAGCTCATATTAACCAGTGGCTCAAACACCCTCGACTCAATCTTCTCAGATTGTCCCCCAACAAACGCCACCAGTAGCAACTCCGTGTTGGATTATTTAGAACCCTTTGGATCTTCCGGGTTTGAGCCTTTGGGCTCTTCCGTTTACCTTCGCCAGAGGGACATCCTCCAAAAGTTCTACCAAGAAAGCCGAGGGAACGGGAACGGGAACGGCAACGGCAACGGTTCTCTTCTTCCCACTTCCTTCGCAAACCCGTCTATAAATTCTCTTTACACTGCTTCGTTGACTTCTTCTTTGACCAACCCTTCCAAGAAAAAGCTCTACAGGGGAGTGAGACAGAGACACTGGGGCAAATGGGTCGCCGAAATTAGACTTCCCCAGAACAGGATGAGAGTGTGGTTGGGCACCTACGACACCGCCGAAGCAGCCGCCTACGCCTACGACCGTGCCGCGTATAAGCTACGTGGAGAGTACGCGCGTTTGAATTTCCCCAATTTGAAGGACCCGACCAAGCTGGGGTTCGGAGATTCCGCCAGATTGAACGCCTTGAAGAGCTCCGTCGACGCCAAAATCCAGGCCATATGCCAGAAGGTGAAAAGGGAGAGAGCCAAAAAGATCGCCGCCAAGAAGCTCAGTTCTGCCACCGCTCACGCCAACCGCAAGGAGAGCGAGAAGATAAATTCCTCCGCTTCCTCCTCGTCGTCGTCGCTGCCCCTGTCACCGCCGTCGATTTTTTGCGATAATTGGGCGAACGAGTTGTTTTCGCCGACCGTTTCGGAGGATGGGATTTGGAAGGGGGAGAACTCGCCGACCTCGGTTTCGACGGAGTGTCCAATGATGGTAACAGACGAGACGGAGTTCGAAGGTTGTTCTCTGGCGAGGTTACCTTCTTTCGATCCCGAGTTGATTTGGGAAGTTCTGGCCGTTTGA 990 0.5242 MDGMQERNSQLGTDIGSSLSKLILTSGSNTLDSIFSDCPPTNATSSNSVLDYLEPFGSSGFEPLGSSVYLRQRDILQKFYQESRGNGNGNGNGNGSLLPTSFANPSINSLYTASLTSSLTNPSKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKSSVDAKIQAICQKVKRERAKKIAAKKLSSATAHANRKESEKINSSASSSSSSLPLSPPSIFCDNWANELFSPTVSEDGIWKGENSPTSVSTECPMMVTDETEFEGCSLARLPSFDPELIWEVLAV* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0229 329 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Vra11g0229 329 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Vra11g0229 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 14 328 - -
Vra11g0229 329 Gene3D AP2/ERF domain 127 185 IPR036955 GO:0003700|GO:0006355
Vra11g0229 329 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Vra11g0229 329 MobiDBLite consensus disorder prediction 231 259 - -
Vra11g0229 329 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Vra11g0229 329 Pfam AP2 domain 128 177 IPR001471 GO:0003700|GO:0006355
Vra11g0229 329 SUPERFAMILY DNA-binding domain 127 184 IPR016177 GO:0003677
Vra11g0229 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 328 - -
Vra11g0229 329 CDD AP2 126 186 IPR001471 GO:0003700|GO:0006355
Vra11g0229 329 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0229 Vra-Chr11 1538480 1540913 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0229 2 328 AP2-EREBP Transcription Factor Family AT1G64380 45.763 9.00e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0229 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0229 - - gmx:100785364 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0229 11 1538480 1540913 Vra11g0229 11 1538480 1540913 ECH