Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0228 ATGCACTATTTCAAAGAGAAATTCACAGCAGAATTAATGAGTAGTGAAATGGATTCGAGAGATAGCAGTGCGAACACAAAATCTAAAGAAATTGAACTATATCCCAAGAAGAGAAAGCGTCATTCACAAGTAGCGGGGGTTATTCCCACCATGGAAGAATCCAAGGCCTCCTCCTCTTCCGCAACACACGGTTCCATATCCGTGATCGGGCGGCGACGCGCAATGGAGGACGCCGTCATGGTGGTTCCCGGCTTGGTGGCGGCGGGGCAGTGGTGTGGCGGTTATGATTTCTTCGCGGTTTACGACGGACACGGCGGGACGTTGGTGGCGAACGCTTGCCGCGACAGGCTGCACCTGCTGTTGGCGGATGAAGTGAGGGAGAACGCGAAGAAGGGATTGGATTGGTACGAGGTGATGTGTTCGTGTTTCATGAAGATGGACAAGGAGATCGGAGTTGGTGGTAAGGCGCGCGATGACGGTAGCGGAAACACCACAGGTTCAACGGCGGCGGTGGTTGTCGTTGGGAAGAAGGAGATTGTGGTGGCGAATTGCGGTGACTCGAGGGCGGTGTTGTGCCGTGGCGGTGTAGCCATACCACTTTCGCGTGATCATAAGCCTGATCGTTCAGATGAAAGAGAGAGAATAGAAGCTGCCGGTGGAAGAGTGATTAATTGGAACGGAAGTCGTGTTTTGGGAGTTCTTGCTACTTCCAGATCCATTGGGGATCATTCGATGAAACCTTTTGTGATATCTGAGCCAGAGACGATGGTGTACGAGCGAACAGAGTGTGATGAGTTTGTGGTGGTAGCAAGCGACGGGTTATGGGATGTGGTGTCTAACAAGTTTGTTTGTGAGGTTGTACGAAGCTGCCTCCATGGCCAAATCAAGAGGAATTTAAAAGAGGAGACTGTTGTAAGCAATGCTACAGAAGCTGCATCTTTGTTGGCAGAGTTGGCCATGGCTCGTGGAAGCAAAGACAATATCAGTGTCATAGTCATCCAACTCAACAACACCACTTCATCCTGA 1026 0.5068 MHYFKEKFTAELMSSEMDSRDSSANTKSKEIELYPKKRKRHSQVAGVIPTMEESKASSSSATHGSISVIGRRRAMEDAVMVVPGLVAAGQWCGGYDFFAVYDGHGGTLVANACRDRLHLLLADEVRENAKKGLDWYEVMCSCFMKMDKEIGVGGKARDDGSGNTTGSTAAVVVVGKKEIVVANCGDSRAVLCRGGVAIPLSRDHKPDRSDERERIEAAGGRVINWNGSRVLGVLATSRSIGDHSMKPFVISEPETMVYERTECDEFVVVASDGLWDVVSNKFVCEVVRSCLHGQIKRNLKEETVVSNATEAASLLAELAMARGSKDNISVIVIQLNNTTSS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0228 341 MobiDBLite consensus disorder prediction 22 37 - -
Vra11g0228 341 CDD PP2Cc 63 335 IPR001932 -
Vra11g0228 341 SMART PP2C_4 52 333 IPR001932 -
Vra11g0228 341 Pfam Protein phosphatase 2C 65 328 IPR001932 -
Vra11g0228 341 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169
Vra11g0228 341 SUPERFAMILY PP2C-like 58 337 IPR036457 -
Vra11g0228 341 MobiDBLite consensus disorder prediction 14 37 - -
Vra11g0228 341 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 15 337 - -
Vra11g0228 341 Gene3D - 56 340 IPR036457 -
Vra11g0228 341 ProSiteProfiles PPM-type phosphatase domain profile. 62 335 IPR001932 -
Vra11g0228 341 PANTHER ALPHABET, ISOFORM E-RELATED 15 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0228 Vra-Chr11 1518850 1524160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0228 59 335 PP2C-type Phosphatase Gene Family AT2G29380 48.264 3.03e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0228 K14497 - gmx:100785905 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0228 11 1518850 1524160 Vra11g0228 11 1518850 1524160 ECH