Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0220 ATGATCACATCACAATTGTCTGTTGCAATGCTGTGTCTGCTACTGTTCATCATGTTTCTGCTTCCTCTCAGAGGAGAACCAACAACGTGCCAAGCAACATCATGCGGCAAAATCAAAATTCAGTTTCCATTTGGTTTGAGACAGACTCGAATGCAAAAGGAAACCTCTGGTCGGTGCAGCTATCCGAGATTCCAACTTTCCTGCGACAACCGTAACCGAACCATTCTGAGCCTCCCAGGTTCCGGCGATTTGGTGGTGAAAAACATAAATTACAAGTCCCAAACCGTTAAGGTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTCTTGCACAACCTGAGCCTTTCCCTGCACCCACCGTTCACGTTTGAGGCAACCGTATACGACCTAACCTTCCTTCGTTGTCCTTCCAACACAACACACACCATTCCATCCCCGCCAATTTCATGTCTCAAGTCCAATTCCTCCTCCTCCGTCACATTCTCGTGGTGGCCTCTCAGTGGCACGCCACCGTGGAGTGAGGAGTGCGAGGTGATATCCTCGGCTTTTGTTCCCATTCCAAATCCAGACACGACATCGTTTTTCTTGCCCGATCTCAACAAGGATGTCGTGTTGAAGTGGAACGAACCCGCGTGCGGGGATTGTGCTGGTCGGGGCCAGGTTTGTGGGTTCACCGATGACACAAACAGTTTACAAGTTGGATGCTTCTTCTCTACTCGTAACCAAAACCAAGGTCTTTCAAGAAGCGCAAAATATGGCTTAACAATTGGAGTGGGAATACCTGGACTCCTATGTTTAATTGGGCTTTGCTGCTTTATATGTAGTAAATTCGATGTGTACACACATGGTCACCGGGCCAGGCCCAGCACAGAGCTTCCAAGCTCTACTGCCACTCTTCCACTCTCCTCTTCGTTAATGGGCCTTAATGGGCCGGAAATTGAAAAATTCCCGAAGACTCTTATTGGTGACAGTGGGCGCTTACCGAATTGGAGCGATAACACGTGTCCAATATGTCTCTCCGAATACGAGCCCAAGGAGACACTGAGAACCATTCCTGCCTGCAACCATTATTTTCATGCAGACTGCATAGATGAGTGGCTGAAGATGAATGCCACGTGTCCCTTATGCAGAAATTCACCTAATCCATCTTCTACCGCTACCCCTCCTTCTTAG 1173 0.4859 MITSQLSVAMLCLLLFIMFLLPLRGEPTTCQATSCGKIKIQFPFGLRQTRMQKETSGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKNINYKSQTVKVNDPEGCLPKRFLHNLSLSLHPPFTFEATVYDLTFLRCPSNTTHTIPSPPISCLKSNSSSSVTFSWWPLSGTPPWSEECEVISSAFVPIPNPDTTSFFLPDLNKDVVLKWNEPACGDCAGRGQVCGFTDDTNSLQVGCFFSTRNQNQGLSRSAKYGLTIGVGIPGLLCLIGLCCFICSKFDVYTHGHRARPSTELPSSTATLPLSSSLMGLNGPEIEKFPKTLIGDSGRLPNWSDNTCPICLSEYEPKETLRTIPACNHYFHADCIDEWLKMNATCPLCRNSPNPSSTATPPS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0220 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 382 IPR013083 -
Vra11g0220 390 ProSiteProfiles Zinc finger RING-type profile. 335 377 IPR001841 -
Vra11g0220 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 387 - -
Vra11g0220 390 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 387 - -
Vra11g0220 390 Pfam Wall-associated receptor kinase galacturonan-binding 30 100 IPR025287 GO:0030247
Vra11g0220 390 SMART ring_2 335 376 IPR001841 -
Vra11g0220 390 Pfam Ring finger domain 333 377 IPR001841 -
Vra11g0220 390 SUPERFAMILY RING/U-box 329 381 - -
Vra11g0220 390 CDD RING-H2_PA-TM-RING 334 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0220 Vra-Chr11 1460303 1463372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0220 25 387 C3H Transcription Factor Family AT2G46495 33.423 3.19e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0220 - - cam:101497311 352.443