Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0213 ATGGAATCAGTGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCTTCGCCCCTTCAGTTCTTTTCCATGATGTCTCTTTCACCTGGCATAGGATCTCCTTATCCTTGGCTTAGAGAACTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTGATTGGTTGTGCCAATCAGGTAGCTAGTGGTAATCTTGAAAATGCAAACATGTTGCTTGAGCAGATTTCCCAGCTTGCTTCGCCTGATGGGGATACTATACAGCGAGTTGCTGCATATTTCACCGAAGCACTCGCTGATCGGATACTGAAAACATGGCCTGGTCTCCATAAGGCACTCAATTCCACCAGAATAGCTATGGTGTCTGAAGGAATTCTTGTTCAGAAGCTCTTTTTCGAGCTTTTTCCGTTCTTGAAGATGTCATATATTCTGACAAATCAGGCTATTGTTGAAGCCATGGAAGGGGAGAAAATGGTGCATGTAATTGATCTCAATGCGACCGGCCCAGCACAGTGGGTTGCCCTCTTCCGTGTTCTGAGTGCACGCCCTGAAGGACCTCCTCATTTGAGAATTACTGGGGTGCATCACCAGAAAGAGGTTCTGGATCAGATGGCTCATAAACTCACTGAGGAGGCAGAAAAGTTGGATATCCCATTCCAGTTCAACCCTGTTGTCAGCAAGATAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTGGCAATCAGTTCCATTCTGCAGTTACACTCCCTTTTGGCCTTGGATGACGATGCCTCCAGGAGAAGATCTCCTCTTCCGTCAAACAATTCAAATGCAATTCAACTGCAGAAAATCCTGCAGATGCATCCAAACACACGCTGTGATTTGGTTGAAAAGGACATGGTTCACGGTTATAGTCCAAGTCCAGATTCAGCCTCAGCCTCATCCTCACCCGGGTCTTCATCTACATCAATGAAATCCGAGAGCTTTCTGAATGCCTTGTGGGGGTTATCACCAAAGATCATGGTTGTAACGGAGCAAGACTTCAACCACAACAGTTCAAACCTGATGGATAGGCTGTTAGAATCTCTAAATTCTTATGCTGCATTGTTTGATTGTTTGGAATGCACTGTCTCCAGAGCATCCTTGGATAGAATGAAGATCGAGAAGATGCTTCTGGGTGAGGAAATCAAGAACATTGTAGCCTGTGAGGGAGCTGAAAGAAGGGAAAGGCATGAAAAGATGGATAAGTGGATCCAGAGACTCGATTCATCTGGTTTTGCAAACGTGCCTTTAAGCCGTCAGGGTGTGACGCAGGCAATGAGGTTCTTGGAGAACTATGGTTGTAATGGATATAGAATGAGGGAGGAAAATGGCTGTGTGATCATTTACTGGCAGGATAGAACCTTGTTTTCTGTGACAGCTTGGCGATCAAGAAGGTAA 1431 0.4479 MESVFQEEGSSSVTSSPLQFFSMMSLSPGIGSPYPWLRELKSEERGLYLIHLLIGCANQVASGNLENANMLLEQISQLASPDGDTIQRVAAYFTEALADRILKTWPGLHKALNSTRIAMVSEGILVQKLFFELFPFLKMSYILTNQAIVEAMEGEKMVHVIDLNATGPAQWVALFRVLSARPEGPPHLRITGVHHQKEVLDQMAHKLTEEAEKLDIPFQFNPVVSKIENLDFDKLRVKTGEALAISSILQLHSLLALDDDASRRRSPLPSNNSNAIQLQKILQMHPNTRCDLVEKDMVHGYSPSPDSASASSSPGSSSTSMKSESFLNALWGLSPKIMVVTEQDFNHNSSNLMDRLLESLNSYAALFDCLECTVSRASLDRMKIEKMLLGEEIKNIVACEGAERRERHEKMDKWIQRLDSSGFANVPLSRQGVTQAMRFLENYGCNGYRMREENGCVIIYWQDRTLFSVTAWRSRR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0213 476 MobiDBLite consensus disorder prediction 301 320 - -
Vra11g0213 476 ProSiteProfiles GRAS family profile. 40 473 IPR005202 -
Vra11g0213 476 Pfam GRAS domain family 49 473 IPR005202 -
Vra11g0213 476 MobiDBLite consensus disorder prediction 304 320 - -
Vra11g0213 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 474 IPR005202 -
Vra11g0213 476 PANTHER SCARECROW-LIKE PROTEIN 3 5 474 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0213 Vra-Chr11 1399489 1402323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0213 1 476 GRAS Transcription Factor Family AT1G50420 64.403 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra11g0213 GRAS 6.6e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0213 - - vun:114174232 791.956