Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra11g0190 | ATGGGGTTCTGGGGGATTGAAGTCAAACCTGGCAAACCGTGTCCTTATCACTCTGACAATGTGCGAGGGAAACTGCACGTTACCCAGGCTACTCTAGGCATTGGCTCGTCGAAGGATAAAAGCATTCTTCAGTGCGCTTCTGGACACAAAAGTCCAGTTTTCTTGTGTTCATTGCTACCAAATAGAATTGAGTCATGCCCTTTGAATCTTAAGTTTGACATTGATGACTTAGTTGCATTCTCAGTGATTGGTTCACGAAGCATCCACCTTTCTGGTTTTTTCGCGACTGATGACGGAGATGAGCTTAAGGATGACTATGAATATGATTCATGGGGGGAAGACATTGAAGGAACTGATACAACTGAATCATCTGAATATGATAGTGAAGATGAATATGATAATGACTTTATTGTTGATAGTGATGTTGATATTTACCAGTCTTCACCAGTCCCAAATAGTGGAGTTGTAATTGAAGAAATAGTGGATGATGAAAAACCTGAATCTGGAGATGATCAAAATAAGCAATTAAAGAAAACGAAACAAGTAGCTAAGTTGAAACCAAAAGACAGCAAAATTTTCAAGTCTGAAATTGTTGCTAAGGGTGAGACTGACCTTGTGGAGAATGAAGACGAAGATGAAGATGGTTTTCCAATTTTTCCTGCTGAGAAAGATGTCTCTATCTCTCAGAAGGCAGATGGAGAAACGAAAGGAGAACAAGCACTTAAGAAAATTGAGAATGCCAACAAGAAGAGAAAAGATGTTGATCATTCTGCTGGAGTTAAACGGAAGGTTGACAGTGCTGATGAAGATGAGCCACAGGATGGGAAAAAAAAGAAAAAAAATAAGTTAAAGGAACGTATTAAAGAGAAAAATGCTGATGCATCTGGCAATAGCAATGAGATAAATGTTACTGCCCCAGATGAAAAGCATCCAGAGGCTGTCAAAACTACAACCGGCCAGAGTGATGTTTCTCATGCAAAGGATGAAAATGAGGGAAAATTGTCCAATAACGAGGTCGGTGCTGAGAAAAAAAACAAGAAAAAAAAGAAGAAAAAGACCAAGGAGTTAGAAGGGGTAGCTGCTACAGACCAAATTACTTCAAGTGCTGAAAAGCAGAATTTGTCTGTTGCCTTGGAGAAAAAGGGGAAGAAACAAACTGAGACCAAGCCATCTCAAGTGAGAACTTTTCCGAACGGATTGGTTATAGAGGAACTCCTTATGGGTAAACCTGATGGCAAAAGAGCTGCTCCTGGAAAAAAGGTCAGTGTTAAATATATTGGCAAGCTGCAAAAGGATGGGAAAATATTTGACTCAAATGTGGGAAGAGCACCCTTTAAATTTCGCCTGGGTGTAGGACAAGTCATCAAAGGGTGGGAGGTTGGGATCAATGGGATGAGGATCGGGGACAAAAGAAGGATCACAATTCCACCATCTATGGGATACGCAGATAAGCGCGTTGGGACTATACCACCGAATGCGTGGCTTGTATTTGATGTTGAGTTGGTTGATGTTGATCGCTAA | 1521 | 0.407 | MGFWGIEVKPGKPCPYHSDNVRGKLHVTQATLGIGSSKDKSILQCASGHKSPVFLCSLLPNRIESCPLNLKFDIDDLVAFSVIGSRSIHLSGFFATDDGDELKDDYEYDSWGEDIEGTDTTESSEYDSEDEYDNDFIVDSDVDIYQSSPVPNSGVVIEEIVDDEKPESGDDQNKQLKKTKQVAKLKPKDSKIFKSEIVAKGETDLVENEDEDEDGFPIFPAEKDVSISQKADGETKGEQALKKIENANKKRKDVDHSAGVKRKVDSADEDEPQDGKKKKKNKLKERIKEKNADASGNSNEINVTAPDEKHPEAVKTTTGQSDVSHAKDENEGKLSNNEVGAEKKNKKKKKKKTKELEGVAATDQITSSAEKQNLSVALEKKGKKQTETKPSQVRTFPNGLVIEELLMGKPDGKRAAPGKKVSVKYIGKLQKDGKIFDSNVGRAPFKFRLGVGQVIKGWEVGINGMRIGDKRRITIPPSMGYADKRVGTIPPNAWLVFDVELVDVDR* | 507 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra11g0190 | 506 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 413 | 502 | IPR001179 | GO:0003755 | |
| Vra11g0190 | 506 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 418 | 505 | IPR001179 | GO:0003755 | |
| Vra11g0190 | 506 | PIRSF | FK506-bp_FPR3 | 1 | 52 | IPR023566 | GO:0003755 | |
| Vra11g0190 | 506 | PIRSF | FK506-bp_FPR3 | 47 | 263 | IPR023566 | GO:0003755 | |
| Vra11g0190 | 506 | PIRSF | FK506-bp_FPR3 | 252 | 505 | IPR023566 | GO:0003755 | |
| Vra11g0190 | 506 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 1 | 255 | - | - | |
| Vra11g0190 | 506 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 269 | 504 | - | - | |
| Vra11g0190 | 506 | Gene3D | - | 358 | 506 | IPR046357 | GO:0003755 | |
| Vra11g0190 | 506 | SUPERFAMILY | FKBP-like | 391 | 504 | - | - | |
| Vra11g0190 | 506 | MobiDBLite | consensus disorder prediction | 322 | 343 | - | - | |
| Vra11g0190 | 506 | MobiDBLite | consensus disorder prediction | 227 | 278 | - | - | |
| Vra11g0190 | 506 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 269 | 504 | - | - | |
| Vra11g0190 | 506 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 255 | - | - | |
| Vra11g0190 | 506 | MobiDBLite | consensus disorder prediction | 163 | 182 | - | - | |
| Vra11g0190 | 506 | MobiDBLite | consensus disorder prediction | 110 | 129 | - | - | |
| Vra11g0190 | 506 | Coils | Coil | 273 | 293 | - | - | |
| Vra11g0190 | 506 | Gene3D | Nucleoplasmin core domain | 1 | 100 | - | - | |
| Vra11g0190 | 506 | MobiDBLite | consensus disorder prediction | 199 | 362 | - | - | |
| Vra11g0190 | 506 | Pfam | Nucleoplasmin-like domain | 3 | 94 | IPR041232 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra11g0190 | Vra-Chr11 | 1259802 | 1264243 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra11g0190 | 418 | 502 | Calmodulin-binding Proteins | AT5G48570 | 51.724 | 6.38e-17 | 81.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra11g0190 | K14826 | - | gmx:100792856 | 788.875 |