Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0188 ATGGAAATGCCACCTTCCAGTTCGACCCGTGTTGGTGCTGCGTCTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCGGGAACCAAGACCCGAATTTGGCTCGGAAGTTTCGAGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGTGGCCGCGACGCCAGGCTCAACTTCCCCGAGCTCGCAAGCACGCTGCCACGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCGGCCCTGAGGCTCCGCACCAACCCCGCCCCGCCGGAGACTGAGATAGGAGGCGGTTCCTCGACGGCGCCGCCGCTGACGGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGACTGCCCCATGGACTCCCCTCAGACGTGGATGCAAATGCCGGACACTTTCATGATGCACGATCAATCCATGATGTTTGCAAATGGGTATGCCTTTGAAGACAACGAGTGGGAGGATATGCAGAATGATTCTCTCTGGGATCCTTAG 555 0.6018 MEMPPSSSTRVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAPPETEIGGGSSTAPPLTVRLSPTQIQAINDCPMDSPQTWMQMPDTFMMHDQSMMFANGYAFEDNEWEDMQNDSLWDP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0188 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 10 183 - -
Vra11g0188 184 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vra11g0188 184 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vra11g0188 184 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Vra11g0188 184 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vra11g0188 184 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vra11g0188 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 183 - -
Vra11g0188 184 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Vra11g0188 184 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vra11g0188 184 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0188 Vra-Chr11 1255133 1256820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0188 16 184 AP2-EREBP Transcription Factor Family AT1G71450 61.628 3.71e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra11g0188 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0188 - - gmx:100815719 343.969