Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0187 ATGGATCAGGAACCAACAAGCACCATGCAACAATGTGGAATAGCTCCAACGGCAACATCGTATCGCGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATTCGCGAGCCGGGGAAGAAAAGCAGAATATGGTTGGGGAGCTATGAGTCGCCGGAGATGGCAGCAGCAGCTTATGACGTGGCGGCGTTGCACCTCAGAGGACGCGCCGCCAGACTCAACTTTCCTGAATTGGCGGAGACACTGCCACGTCCCGCCAGCTCCAAGTCCGAGGATGTGCAGGTGGCAGCACAACAAGCGGCATTGAGGTTCACTAGGTCACCGACGATGTCACATAACGAGATACGTGTCAGTGAAAGCAGTGACAGAAACAGTAACAATAGAAACAGTAACAGTAAGAAGAAGAAGAGTGAGAATAGTGGTGTGGTTCCTCTGCAAGTGGGGCTTTCGGCTACACAGATTCAAGCTATAAATGAGTCTCCATTGGAGTCACCGAAGATGTGGATGATGCAAATGGCAGAGACGCTTAGGTTTGGGTTTGGTGAGGAGTACTCTATGATGATGGTGTCTTGTGATGGTGATGATGATTATGCTATGGAGTTGAGTGGATGGGAAGAAATGCATCATGAATCCTTATGGGACTCTCCAGAATATATGTGA 663 0.4947 MDQEPTSTMQQCGIAPTATSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDVAALHLRGRAARLNFPELAETLPRPASSKSEDVQVAAQQAALRFTRSPTMSHNEIRVSESSDRNSNNRNSNSKKKKSENSGVVPLQVGLSATQIQAINESPLESPKMWMMQMAETLRFGFGEEYSMMMVSCDGDDDYAMELSGWEEMHHESLWDSPEYM* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0187 220 MobiDBLite consensus disorder prediction 84 142 - -
Vra11g0187 220 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vra11g0187 220 MobiDBLite consensus disorder prediction 88 116 - -
Vra11g0187 220 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vra11g0187 220 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Vra11g0187 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 186 - -
Vra11g0187 220 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vra11g0187 220 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Vra11g0187 220 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Vra11g0187 220 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vra11g0187 220 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vra11g0187 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 14 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0187 Vra-Chr11 1235754 1236712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0187 19 215 AP2-EREBP Transcription Factor Family AT1G71450 46.193 5.18e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0187 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0187 - - vra:106777427 412.92