Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0158 ATGAAGCTGAAAACATACGCTGGTCTCAGTTTCATCGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGTCAATTTTATCCGGCAATGGTGTATCTCTCCACTTCCAAGATCAGCTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAGAGGCTAAACGAGCAATCGTGGAGGGAAGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTCACATTTCTTGCGATGGTCACGGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGACAGCCTTTTCTTATACAGTTCTTTGAAGCATCTGATAGAAACTTGGCAGGCTTCAGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACCACCGTGTCAATTTTTGTAAAATATATTTTTTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTCATTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACTCCTGAGGAGCTTACTGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCACTGTCTCCGATCATGGCTGGAGCGGCAGCATACATGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGGAGCTGTAGGGCCACAAGGATCACAGGCTGATGGCCAACGGCAAGGAGCTGGGACAGGCGGTGAAAGCACAGCTCAAAATGAGGCTACGGATAATTTGAGTAGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCTGCTTCCATATATGAGAAGTCTTATGTGTACCCTTCCGCAAATTCTTTTGTATGTTCTCCTGGGTACACTCTCCATCCTCCGGTGGCTGAATCTACTAATAAAGACAGTAGTGGAGGGCAGACTTCCCGCGAACAAACACAAAGTTGGTTTCTTACCACTGGTGCACCAACAAATGAATCTTATCCTCCAATGCAACACTTCCATCTTCTACCTTCCCAACCATATGCAGCCCTTGTCAATTATGGAAAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCCCATCTGGAAGCATATAGAAAACTCCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATTCTGCAGAAGACAAGGTCTGACAGAAGTGTAGATGAGGGCACATCGTCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCTGAATCTGGTCGTGCTTATACTGAGGAGATTCAAGATGGAAAAGCGTAA 1638 0.4353 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELTASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTGAVGPQGSQADGQRQGAGTGGESTAQNEATDNLSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLHPPVAESTNKDSSGGQTSREQTQSWFLTTGAPTNESYPPMQHFHLLPSQPYAALVNYGKGFENDPNIPSSHLEAYRKLLQCQIQILQNQLEILQKTRSDRSVDEGTSSSDSRGKSVISSSESGRAYTEEIQDGKA* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0158 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Vra11g0158 545 MobiDBLite consensus disorder prediction 505 545 - -
Vra11g0158 545 Pfam Ring finger domain 290 329 IPR001841 -
Vra11g0158 545 MobiDBLite consensus disorder prediction 339 373 - -
Vra11g0158 545 CDD RING-H2_synoviolin 288 329 - -
Vra11g0158 545 SMART ring_2 291 328 IPR001841 -
Vra11g0158 545 MobiDBLite consensus disorder prediction 341 373 - -
Vra11g0158 545 PANTHER RING ZINC FINGER PROTEIN 1 384 - -
Vra11g0158 545 Coils Coil 486 506 - -
Vra11g0158 545 SUPERFAMILY RING/U-box 271 335 - -
Vra11g0158 545 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Vra11g0158 545 PANTHER - 1 384 - -
Vra11g0158 545 MobiDBLite consensus disorder prediction 518 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0158 Vra-Chr11 1037902 1043477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0158 1 531 C3H Transcription Factor Family AT3G16090 65.485 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0158 K10601 - gmx:100816441 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0158 11 1037902 1043477 Vra11g0158 11 1037902 1043477 ECH