Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0153 ATGGATCCTTTTGATGATCTTCTACCCGAGACTACTGTTGCACGCATTCGGCCGGGTACCAAGTTTGCTCCAAAGGCCAAAGCGAAACAGCGGCCACGAAAGGAAGTACCTTCGTCGGAACATGCCACCTCATCTAAAGATGCTGGGAATGAATGTCAAAATGTAGGTCCTTCCACGCTAAGTGTGCCAGCGAAAGAATCTATGGGATTCATTCATCAGACGCAGGTACAATTTCCAAATTCTGAAAGTGGAAATCCTGATCAAGATAGTGTGCAGGGAGATAGTGCAGCCTTGGTGGACAGTTCCACAATCACAGTATCTGAAATTGGTGCTGGTCAGAATTCTACAAACTTCTTAGAATCGGCATTTGAGGCTGGCCCAACAGATTTTGACGGGGACTCGGTCACTAACTTCGTTTTTGAAACCAACCTCAATAATGGCACGGATTTGAGCTTCGGAAGTGTTTCAGATAATAAAGTTGCAATAACTCAAACAGTTGATTCAAAGTCAAACATTGGGAAAGAACCAGAGGTAGTATCTGCAGAGATTGAATTGGATCCTTTCAGTGACGTCCTCCCTGATCTTCCTGCTAGGAATGCTCATAAATTTAAACCCAAGATTAAGCCACGACCTAGAGTAGGCAATATGCCGGCTTCTGCTTCATCTGATGTTATGATGGAAAAATCTGTTGAGTTGCCTACTTCATGCTCAACGGACTTTCAATCTTTTCAGTCAACTAGTGTACTAAACCAATCAACCAGTTTACCTTTGCCAACGTCAGAGATTCTTAGGAAGACTTATATGCCCGATAAGTTTGGTAACACAAGCTCAAATGTTTCAATATCCGAAGATAGTAAGAGCTTGGCAGCAGCAACTCCTTCCCAATTGGATTCCCTAAATGCTATGCTTTCAGTGGACGCAGTTCATAATGGTACTAGAGATTGGCCTTCTACCTTTGGTAAATCATCTGGAGAGGCTGCAGACATTTTTTCTGGGTTGGAATCCCTTGATGACTTTCTCACCCAAGCGACTACTGATACAGGAAAACCAGCTCTTCATTCTTTCAATGAGAAGGGTGCAGAGGAAAACTTTGTCACACCTGTTTGTAGTTCTATTAACTCCTTTAGGGAATGTGATAATACCCAAGTTCAAAGATGTCCTACACCACAAGATCCAGTAACCTTCAATGAAGCTACCGATCTCAATGAGAGTGATACTCACACTAAGAATAGAATGTCGGAAACAGAGGAAATTGTGGACTTGAATCCCGCCTATCCAATAGATGATGTTTTTGATTATCAATCCATGAAATCTGGTGAAGATCCAACTTCTGGAATTCCAGTGCATGAAGACTTGACAAATGCTGCTGACAGTTCCACATTGGCTGATCTTTTGCATGCAAATGATTCAAGGGAAAAAGAAGTTGCTAATCAAAGGAATAGGGATGGCTCAGACTCATGTTCTCTGAGGAAGAACAAAAGATCTTCTATTTCTGGTGAGGAGGATAATGGTGGTAAAACCTCAAGGCAGCGGAGAAAACTAGCAGCATGTAAACCTAAAAACAGCTCATTGAATGAGGATGTTGAAGATGATAATGACATTGATTCTCCTTATCATTCAAACGAACATGAACTTCAAGAAAATGATGATGACTATGAAGTTGATCATTCATCCAAGAAGAAGAGAGGATCAAAGAGTTCACAGAAGAAATCTGTGGCCAAAAGTGGAAAAACGTCTCAAAGGCGTAAGAAGGCCGATGATGATGTACAAAAAACTAAGGAACCTCCTAAAAAGTTCTCTCATTCAACCCGACGAAAGAAAAGATGTGTGGACAAGGCTCTGCTGGAAATTCCCGAGGACGAACTTGATCTTCGAACATTGCCTATTAAAGATATTATTTTACTTGCAGAACACAGGGAGCGGCAAGCGAAAAAAGATGCGATGACTTCAAATATGTCTCCCTCCAATCAAAGTGGTGGAGATTCTCTTCATGGGGCTGGTGCGTATAATGAACATGAGTTCTCAGGTTCAGAAGATGGTGAAGACCCATATGATGATCAAGACAATGAAAGGATTGCATCAACTTCCGTTCTATACAATTACCAGACTTTCATGGAAAAGACACCTAGGGGGAAATGGTCAAAACAAGATACCGAACTGTTTTATGAGGCTATTAGGGAGTTGGGTACAGATTTTTCTATGATACAACAGCTTTTCCCTGATAAAACCCGCCGTCAAATTAAGTTGAAATACAAGAAGGAAGAGCGGGAGCATTATTTACGGTTAAGGGATGCTATACATAACCGTGCGAAAGATCATTCTCATTATAAATTGTTGATTGAACGATTGCAACTAGCTTCCACCAAGACAGAGGAGGTTATGGACCTGACAACAGGAGCTAATGAAGAGGTTGTGGAGGCTGCAACAATTAAGCATGACGCGGATGTTAAACAACAGGAAGATTCTCCGGCAGTTCAGAATCCAGAGGAATATGATGACAGTGAGGATGACTCTCTAAAATGGTCTCAGTATAAAAGTCTGTATTAG 2547 0.4158 MDPFDDLLPETTVARIRPGTKFAPKAKAKQRPRKEVPSSEHATSSKDAGNECQNVGPSTLSVPAKESMGFIHQTQVQFPNSESGNPDQDSVQGDSAALVDSSTITVSEIGAGQNSTNFLESAFEAGPTDFDGDSVTNFVFETNLNNGTDLSFGSVSDNKVAITQTVDSKSNIGKEPEVVSAEIELDPFSDVLPDLPARNAHKFKPKIKPRPRVGNMPASASSDVMMEKSVELPTSCSTDFQSFQSTSVLNQSTSLPLPTSEILRKTYMPDKFGNTSSNVSISEDSKSLAAATPSQLDSLNAMLSVDAVHNGTRDWPSTFGKSSGEAADIFSGLESLDDFLTQATTDTGKPALHSFNEKGAEENFVTPVCSSINSFRECDNTQVQRCPTPQDPVTFNEATDLNESDTHTKNRMSETEEIVDLNPAYPIDDVFDYQSMKSGEDPTSGIPVHEDLTNAADSSTLADLLHANDSREKEVANQRNRDGSDSCSLRKNKRSSISGEEDNGGKTSRQRRKLAACKPKNSSLNEDVEDDNDIDSPYHSNEHELQENDDDYEVDHSSKKKRGSKSSQKKSVAKSGKTSQRRKKADDDVQKTKEPPKKFSHSTRRKKRCVDKALLEIPEDELDLRTLPIKDIILLAEHRERQAKKDAMTSNMSPSNQSGGDSLHGAGAYNEHEFSGSEDGEDPYDDQDNERIASTSVLYNYQTFMEKTPRGKWSKQDTELFYEAIRELGTDFSMIQQLFPDKTRRQIKLKYKKEEREHYLRLRDAIHNRAKDHSHYKLLIERLQLASTKTEEVMDLTTGANEEVVEAATIKHDADVKQQEDSPAVQNPEEYDDSEDDSLKWSQYKSLY* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0153 848 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 198 830 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 68 96 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 469 509 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 647 663 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 579 597 - -
Vra11g0153 848 CDD SANT 712 753 IPR001005 -
Vra11g0153 848 MobiDBLite consensus disorder prediction 812 848 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 382 401 - -
Vra11g0153 848 Pfam Myb DNA-binding like 703 784 IPR039467 -
Vra11g0153 848 MobiDBLite consensus disorder prediction 469 611 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 534 561 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 382 414 - -
Vra11g0153 848 ProSiteProfiles SANT domain profile. 712 756 IPR017884 -
Vra11g0153 848 SMART sant 709 757 IPR001005 -
Vra11g0153 848 MobiDBLite consensus disorder prediction 1 96 - -
Vra11g0153 848 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 198 830 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 644 688 - -
Vra11g0153 848 MobiDBLite consensus disorder prediction 42 61 - -
Vra11g0153 848 Gene3D - 713 777 - -
Vra11g0153 848 SUPERFAMILY Homeodomain-like 711 757 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra11g0153 Myb_DNA-bind_7 2e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0153 K15198 - gmx:100792788 1072