Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0152 ATGGGAACACAACCCCGGCAAACATTTCGAGAGGAAGAGGAGGAGGAGCTGCCATGCCGTGGAACTATCTCAGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCTAGTGATAACACCTTTCTTAGGTTAAATAATCTTGACATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCCAAGAAGAAAAAGAGGGGCCAACGCACTGTTGGTGGTGACAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGGAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCCAAGCAATGGTGCTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATCCGACGGAGGGTGTATGATGCTTTGAATGTTCTAATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTCAGCGATATTGAAGATCTAAAGAATGAACGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAGCTGGAAGATCAATACATAGGTCTTCAGAAACTTATAGAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGAGGTGTATCTTTACCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGACAACAAACCAGACAATCCTCCAGATGGCGGGGAAGGTTCTAGCATGTCTAGTTTGTATCATGCACAGATTCCTAGTTCAGTTTCAAACCCTCCTGCGAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1023 0.4379 MGTQPRQTFREEEEEELPCRGTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVAKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKNERLGLRNRIEKKASYLQELEDQYIGLQKLIERNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNKPDNPPDGGEGSSMSSLYHAQIPSSVSNPPARPPSSPPLPGILKARVKNEH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0152 340 Pfam E2F/DP family winged-helix DNA-binding domain 91 171 IPR003316 GO:0005667|GO:0006355
Vra11g0152 340 SUPERFAMILY "Winged helix" DNA-binding domain 91 172 IPR036390 -
Vra11g0152 340 Gene3D Transcription factor DP 177 294 IPR038168 -
Vra11g0152 340 PIRSF Txn_factor_DP 4 340 IPR015648 GO:0005667|GO:0051726
Vra11g0152 340 Pfam Transcription factor DP 179 307 IPR014889 -
Vra11g0152 340 SMART DP_2 178 338 IPR014889 -
Vra11g0152 340 MobiDBLite consensus disorder prediction 285 340 - -
Vra11g0152 340 MobiDBLite consensus disorder prediction 22 57 - -
Vra11g0152 340 PANTHER TRANSCRIPTION FACTOR DP 22 340 - -
Vra11g0152 340 PANTHER TRANSCRIPTION FACTOR DP 22 340 IPR015648 GO:0005667|GO:0051726
Vra11g0152 340 CDD DP_DD 176 279 IPR014889 -
Vra11g0152 340 Gene3D - 83 176 IPR036388 -
Vra11g0152 340 MobiDBLite consensus disorder prediction 1 91 - -
Vra11g0152 340 Coils Coil 201 221 - -
Vra11g0152 340 MobiDBLite consensus disorder prediction 298 315 - -
Vra11g0152 340 SUPERFAMILY E2F-DP heterodimerization region 178 292 IPR037241 -
Vra11g0152 340 SMART E2F_TDP_2 88 171 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0152 Vra-Chr11 1002616 1008128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0152 78 287 E2F-DP Transcription Factor Family AT5G02470 53.774 6.18e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vra11g0152 DP 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0152 K04683 - gmx:100797603 568.926