Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0146 ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCGTTTCTGAGCAAAACCTACGACATGGTAGACGACCCGTCCACCGATTCTGTCGTGTCGTGGGGCGAACACAACAACACCTTTGTTGTCTGGAACGTTCCCCAGTTCGCCACAGACATCTTGCCCAAACATTTTAAGCATAACAACTTCTCCAGCTTCGTCAGACAGTTGAACACTTATGGTTTTAAGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTCTAAAAAGTATTAGTAGGCGTAAATCTGCCCACATAAATGGTAGTCAGCAACCATCCCAAGTGCAAAAATCAGCTGTTAGAGCATGTGTCGAGGTGGGAAAATTTGGGCTTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAGTTGCAAAATGTTGGGCAACGCATGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCACAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAAGAAACATATCACTGGGGCTAATAAAAAGAGGAGGCTCCACAGTCAGGAGAAGGATAATTTAACCACCAACAGTCTCCATAGTGGTCTTGATGGACACGTAGTCAAGTACCAGAGTTCCATAAACAATGCTGCAAAATCATTATTTCGCCAGATATTGCAGATAAACAATTCTACAGCAACCCAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGACGATATCCCTTCTACAATTGCATCAGATAGCAGCAGTTCATCGACTCAGGTTTCTAATGTGACCCTTTCTACTGTTCCTCCTGTTTCTGAACTAACAAGTATGGAAGTAGACTCCCAGTTTCCTGTCAATGGTATGCCCAGTATATCCGAGGTGCAATCTTCACCTGCTGTGTTGGGCTTTTGTCAGAGTCAAGGGGTGGAAACTGAAAGCAGTTTATTGAATCATAATCTGAATGGTGTGGAGAAGAACATGGCGGAGATAGATGTGTCATCTGTTTTGGATGGACCGCACACTGTAGAAGCTGGTTATTCTTCACCCGATGCAGATGGAATTTCCCAACTCCCTGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACGCAGAGGAAATTAAATTTAGCACTCTAGGATGTGGTCTGACTGAGGACCAGGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAATCTTACCAAACAGATGGGACTTCTTGCATCAAAGTCCTAA 1398 0.4363 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGEHNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFKKVDPDQWEFANEGFLRGEKQLLKSISRRKSAHINGSQQPSQVQKSAVRACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRMQSMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESKKHITGANKKRRLHSQEKDNLTTNSLHSGLDGHVVKYQSSINNAAKSLFRQILQINNSTATQSSIKNPDVFLIDDIPSTIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNGMPSISEVQSSPAVLGFCQSQGVETESSLLNHNLNGVEKNMAEIDVSSVLDGPHTVEAGYSSPDADGISQLPDIDDEFWELFFRPSPLTGDAEEIKFSTLGCGLTEDQGLPLERENEKKNVDKMQHVDNLTKQMGLLASKS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0146 465 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0146 465 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0146 465 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0146 465 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0146 465 Gene3D - 8 105 IPR036388 -
Vra11g0146 465 Coils Coil 131 158 - -
Vra11g0146 465 MobiDBLite consensus disorder prediction 207 235 - -
Vra11g0146 465 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0146 465 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Vra11g0146 465 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra11g0146 465 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 436 IPR027725 -
Vra11g0146 465 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 9 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0146 Vra-Chr11 955788 959235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0146 12 465 HSF AT5G16820 51.173 1.48e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra11g0146 HSF_DNA-bind 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0146 K09419 - gmx:100793665 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0146 11 955788 959235 Vra11g0146 11 955788 959235 ECH