Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0142 ATGAGTAAAAGTAAATGCAATTTGTGGAGTGAGTGTGTGCAGATTCCTTTCAGGGTCGTTATCTATATGACTTTGTGTACGATGCCACCACAACATGATGCATACATCGTCACCTTATATATATCAAACACTTGTGTGGTAAATGTTAGTGTTATCATCCTCTTCAAGAACACTTCAAAGGTAATTGGTTTCTTTCTCTTTTTTGGTCTCTTCAATGAAATTGCATATCCTTATACTGTATTGTTATTTCATCATGAATTAGTATTATTGCATGCAGTGGTGATGATGAGAACACCAAGCAGTGATGAAAGTGGGTTGAAGAAGGGGCCATGGAGCCCAGAAGAGGATAAAATACTAGTGGATTACATTCAGAAGCATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAAAGTTGCAGACTAAGATGGACTAATTACCTCAGACCTGATATCAAAAGAGGCAAATTCTCTGATGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGGCAGCTATAGCATCTCATCTGCCAGGAAGAACTGATAATGAAATTAAGAATCTGTGGAACACACATTTAAGGAAAAAGCTTTTGCAAATGGGGTTAGACCCAGTGACTCACCGTCCAAGAACTGATCACCTAAACCTTCTTACCAATCTACAGCAGATTTTGGAAGCTGCAAAAATCGTCAGCAGTTTCACAAACCCTTGTGAAATAAACAATGCTCTAAGGCTACACTCAGATGTCACGCAACTAGCCAAATTCCAGTTACTGCAAAACATGTTTGCCACTCCTTCTCCTTCCTCACTGACAGATGGTTTTCTGCATGATGTTTTGGGGTTTAATCAGTGTAATAATCTCCAAAACCTTCATGATGGTAATTCAGTTTCTCAAATCCTTCCCAATTTCCAAAACTTTGAGGCCATTCAGCAGCCTTCACCATCAAATTCCCTTCCAAATCTGGTTTCTGCCTCCCCTGAACGTTCTCCAGTAAAAGCAGAAAATGTTAATGCAAACTCAAAGGAGTGTTCTAATCCTTCTTCCACCACCTTTGAGTTAACGTGGGGAGATTTCATGGAGGAAGATGCAACTGATAATTATTGGAAAGGTTTCATAGACCAACATTCTAACCAGACATGGTCAACAGTCCAATGA 1194 0.3987 MSKSKCNLWSECVQIPFRVVIYMTLCTMPPQHDAYIVTLYISNTCVVNVSVIILFKNTSKVIGFFLFFGLFNEIAYPYTVLLFHHELVLLHAVVMMRTPSSDESGLKKGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNLWNTHLRKKLLQMGLDPVTHRPRTDHLNLLTNLQQILEAAKIVSSFTNPCEINNALRLHSDVTQLAKFQLLQNMFATPSPSSLTDGFLHDVLGFNQCNNLQNLHDGNSVSQILPNFQNFEAIQQPSPSNSLPNLVSASPERSPVKAENVNANSKECSNPSSTTFELTWGDFMEEDATDNYWKGFIDQHSNQTWSTVQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0142 397 Pfam Myb-like DNA-binding domain 108 155 IPR001005 -
Vra11g0142 397 Pfam Myb-like DNA-binding domain 161 206 IPR001005 -
Vra11g0142 397 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Vra11g0142 397 CDD SANT 163 206 IPR001005 -
Vra11g0142 397 PANTHER MYB TRANSCRIPTION FACTOR 96 325 - -
Vra11g0142 397 PANTHER MYB TRANSCRIPTION FACTOR 326 388 - -
Vra11g0142 397 SUPERFAMILY Homeodomain-like 105 202 IPR009057 -
Vra11g0142 397 CDD SANT 110 155 IPR001005 -
Vra11g0142 397 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Vra11g0142 397 MobiDBLite consensus disorder prediction 325 357 - -
Vra11g0142 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 155 IPR017930 -
Vra11g0142 397 SMART sant 160 208 IPR001005 -
Vra11g0142 397 SMART sant 107 157 IPR001005 -
Vra11g0142 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 210 IPR017930 -
Vra11g0142 397 Gene3D - 163 210 - -
Vra11g0142 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 326 388 - -
Vra11g0142 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 96 325 - -
Vra11g0142 397 Gene3D - 107 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0142 Vra-Chr11 924700 928615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0142 95 386 MYB Transcription Factor Family AT5G16770 51.662 5.97e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g0142 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0142 K09422 - gmx:102660452 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0142 11 924700 928615 Vra11g0142 11 924700 928615 ECH