Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0116 ATGGACACCCCAGAGAGGAACCAGATCAGTGCTACCCTCTCTAAGTTTGAGGATTCACCTGTTTTCAATTATATCAACAGTTTGTCTCCTATAAAGCCCGTGAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCACCTCCATCCGTTTTCACATCACCCCACGTCAGCTGTCTCAAGGAATCTAGATTCCTCAGACGACATATCCCATTGGGCACATGGAAGCCTAAGGTTTCTTCCGAAGATGTAAATAAAGTTCACACAAGTGAAGAAGAGACTCTTGCAGATTCTAAGCGTGCCCATCATAACAAGAGTGAATCGCAGGAGAACACTGAAAAAAGGGCTTCAATTGAGCTATCTAGCGAGCACATAAAATTCTCAGTTGAGCCGCAGCAAAGTTTAAAGTATGACACTTGCGGTAGCCCTGGCTATGATCCCTCAATTTGTGATCATGAGGATAACACTCTTTTGGAACTGCCCGGTGAGGCAGCAGCAGATGCTGGCTACGTTCAGGAAGGGTGTAAAACTGATTCAGTCGAGAGTGAAGTTCATCTTCAGGAAATATGTCAGATGGAGCCAAAAAGTGAAGATCCAGACTGTTATTGGGATAGTTTAATTCCTGATGGCTCTGATATGCTAATTTTTAATTCCCCAGGTGAAGCAGAAGCTTTTAAGGGTCTGATGAACAAACCGTTGGATCCTTCTATACGACTGAGCGATTTTATGTCTGTGCTGCCACTTTCTGCTGTCCATAATGGTAGGAAAATGTTCATTGTTGATTCGGTTGCTTCAGGTTCTGAACATGAAATAGGAGATCACTGTTCTCAGCCAACGATCGCAGCCACGGACACGGATCAAACACGGGATAATCTTGCCGATGTTGTTTTGGTAACTAGCAATTATAACGAGAACGCAAATGATCAGCTTGTTTCTGTCACGCACCGTGCCATACGGAGGCGTTGTCTGGACTTTGAGATGGCCAATGTGCAAAAGAAGAACTCTGATGATAATTCAAAAGGCAGTTCAAGTACATCCGAGTCTGATGAGAGGAATGTTGCCAATGAAAAGCAACTTCTTCCAGCAAAACTCAATCAGAGGGGGATTTTGCAGGGAATTGGTCTACACCTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGAATACAAATTGAAAATTTGTCTTCTGGAAGACAACTCAGTCTGCCCAACTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACAGCAGCATCTATCGTTGGTTCCTGTATCATCTGAAAGAGATTTGGATTCATCAGACAATGGGCTTCAGCCTACCGAAGATTGTTCCCAGCCATCAGTTTACATGGCTGGTGAAGACTTCAATAAGAATAGCCCCAGAAAGAAAAAGCGTAAGTTGGAGACACCTGGAGAAACTGAGGGCTGTAAACGCTGCAACTGCAAGAAGTCAAAGTGTTTGAAGCTTTACTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTGTTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGAAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTTCCTGAAATTGGGGATGATCCAAATAAAACTCCGGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCCAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTCGGTTGCTCCATTGGCTGTAGATGTGAAGGATGCAAGAATGCTTTCGGCAGAAAAGATGGTTCTGCTCCTGTAAGCATAGAAACTGAGCAAGAAGAAACGGAAGCAACTGACAAGGGTATGCCAGAAAAAGCTTCACAGAAAATAGAAATTCAGAACACTGCTGAAGATCATCCTGATTCTGCTGCTATGTCAACACCATTACGACTCTCCAGGCCTTTTGTTCCGTTGCCCTTTTCATCAAAGGGAAAGGCACCAAGATCCTTCGTTACCACCATCTCAGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGGAAAACAAACTCTCTTTGGTCTCAATCCAAGCATTTTCAAAGTGTCCCAGATGATGAAATGCAGGATATTCTACTAGGTGATACCTCTCCTATCACATGCATTAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCCAGCTGTGACATGGGATCATCTCCTAGTCGCAGAGGTGGCAGAAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2310 0.439 MDTPERNQISATLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHIPLGTWKPKVSSEDVNKVHTSEEETLADSKRAHHNKSESQENTEKRASIELSSEHIKFSVEPQQSLKYDTCGSPGYDPSICDHEDNTLLELPGEAAADAGYVQEGCKTDSVESEVHLQEICQMEPKSEDPDCYWDSLIPDGSDMLIFNSPGEAEAFKGLMNKPLDPSIRLSDFMSVLPLSAVHNGRKMFIVDSVASGSEHEIGDHCSQPTIAATDTDQTRDNLADVVLVTSNYNENANDQLVSVTHRAIRRRCLDFEMANVQKKNSDDNSKGSSSTSESDERNVANEKQLLPAKLNQRGILQGIGLHLNALAALKEYKGIQIENLSSGRQLSLPNSTSLQISTSQEQQHLSLVPVSSERDLDSSDNGLQPTEDCSQPSVYMAGEDFNKNSPRKKKRKLETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSAPVSIETEQEETEATDKGMPEKASQKIEIQNTAEDHPDSAAMSTPLRLSRPFVPLPFSSKGKAPRSFVTTISGSALFASQKLGKTNSLWSQSKHFQSVPDDEMQDILLGDTSPITCIKTSSPNGKRISSPSCDMGSSPSRRGGRKLILQSIPSFPSLTPHP* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0116 769 MobiDBLite consensus disorder prediction 607 633 - -
Vra11g0116 769 ProSiteProfiles CRC domain profile. 478 603 IPR005172 -
Vra11g0116 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 480 515 IPR005172 -
Vra11g0116 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 566 601 IPR005172 -
Vra11g0116 769 MobiDBLite consensus disorder prediction 618 633 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 84 120 - -
Vra11g0116 769 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 768 IPR044522 GO:0003700
Vra11g0116 769 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 768 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 727 744 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 459 479 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 427 479 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 332 356 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 82 120 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 727 769 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 337 352 - -
Vra11g0116 769 MobiDBLite consensus disorder prediction 427 448 - -
Vra11g0116 769 SMART CXC_2 563 604 IPR033467 -
Vra11g0116 769 SMART CXC_2 477 518 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0116 Vra-Chr11 791091 795949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0116 16 768 CPP Transcription Factor Family AT4G14770 42.692 4.52e-155 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vra11g0116 TCR 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0116 - - gmx:100804447 1267.29