Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra11g0113 | ATGGCGGTCGGAAAGAATAAGAGGATTTCGAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCGCCGATCCCTTTTCCAAGAAGGATTGGTACGATATCAAGGCCCCTTCTGTGTTCCAGGTCAAGAATGTGGGCAAGACCCTCGTCACTCGTACCCAGGGCACCAAGATTGCTTCGGAAGGACTCAAACACAGAGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGGGATGAGGACCATGCCTTCAAGAAGATCCGTTTGAGAGCCGAGGATGTTCAAGGAAAGAATGTTTTGACAAACTTTTGGGGAATGGATTTCACAACCGACAAGCTGAGGTCTTTGGTCCGAAAATGGCAAACTTTGATCGAAGCTCATGTAGATGTGAAGACCACTGATAATTACACTCTGAGGATGTTCTGCATTGGCTTTACTAAGAGGCGAGCCAACCAAGTGAAGAGGACTTGCTATGCACAATCGAGCCAAATTAGACAGATCCGCAGGAAAATGAGAGAGATAATGGTTAACCAGGCAACAGCCTGTGATTTGAAAGAACTGGTCCGCAAGTTCATCCCTGAGATGATTGGGAAAGAGATTGAGAAAGCAACATCAAGCATCTATCCCCTACAAAATGTGTTCATTCGTAAAGTTAAGATCCTGAAAGCTCCAAAGTTTGACCTTGGCAAATTGATGGAGGTTCATGGGGATTACTCGGAAGACGTTGGAACAAAGGTTGACAGACCTGCTGATGAAACAATACTTGAGGGAACAACTGAAGTAGTTGGAGCTTGA | 786 | 0.4567 | MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMVNQATACDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETILEGTTEVVGA* | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra11g0113 | 261 | ProSitePatterns | Ribosomal protein S3Ae signature. | 61 | 73 | IPR018281 | GO:0003735|GO:0005840|GO:0006412 | |
Vra11g0113 | 261 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Vra11g0113 | 261 | SMART | Ribosomal_S3Ae_2 | 15 | 221 | IPR001593 | GO:0003735|GO:0005840|GO:0006412 | |
Vra11g0113 | 261 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vra11g0113 | 261 | Hamap | 40S ribosomal protein S1 [RPS3A]. | 1 | 258 | IPR027500 | GO:0003735|GO:0005840|GO:0006412 | |
Vra11g0113 | 261 | Pfam | Ribosomal S3Ae family | 16 | 221 | IPR001593 | GO:0003735|GO:0005840|GO:0006412 | |
Vra11g0113 | 261 | PANTHER | 40S RIBOSOMAL PROTEIN S3A | 1 | 261 | - | - | |
Vra11g0113 | 261 | PANTHER | 40S RIBOSOMAL PROTEIN S3A | 1 | 261 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra11g0113 | Vra-Chr11 | 769069 | 771473 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra11g0113 | 1 | 261 | Cytoplasmic Ribosomal Protein Gene Family | AT4G34670 | 85.878 | 9.05e-164 | 452 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra11g0113 | K02984 | - | gmx:100805519 | 484.182 |