Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0099 ATGGAATCGGAAGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAATTCCTCAGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACAGCTTCCACGTCTAGGAAGCTCTATGAATCGAAGAAAAGGACCAACATCAGTGTGTCCGAGAGTGATTCTGGATCAAGTGACGAGTTGCTGATTCCTCCTGGTAGAAGGCTTGGGTCTGAGACTATTCGACTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGGAAGAGGGACAGAATGGAAAGAATTAGGGGTGCGGATAAAGGTTTGGAGCAGTGGGTAACTAAGCGAAGTAAGTTGGATGCGTACAATTTCGAAGAATATGATGGTATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTGATGGAGTTGGTTTTGGAGGAAGAAGTTTTATGGGATCGGAGCATGCTACTAGGAGTGGCATTGATAGGGAATTAAAAAATGGGTCAAGTGGACGTCTTCTTGATAAGCGAAATAACTCTTATGTTGACAGGCCAAGTGGCTTGTTTCCAGGAGATCATGTTGATCACATTAGGTTCAAGAGTAACAGAGACGGCGTTCGGGTACCTATACCCTTGCAGAGGGAGAAGTTTAATTCCGACGAGTCTATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAAGTAATGATTAATAAGAAGAAGGTGTGCGGGCAATCCAAACAATATTACGATCATCACAAACCTGTGGAAAGCAGGAGAAGGTTGGAAACTGAAGAGCCCATCAAGAGGATGAAGACTGAAGAGACTGCTAAGTGGAATGTTCCAACTCGTCCTTCATCATACGTGGAAACAAAACCTGTTGAGAAACCAGGATTACTCAAGAGGCCGGAGAAGAAACAGATAGCATCGAGAAAATCCTTGTCAAGCAAGGATAGCAAAGGCGATGAAGGGGATTCAGATAACAGTGACACATCATTGAATCCCGGAGTAAGAAATGCTGAAGCTGCTAAGCCTGTAAAAAAGATGTTCTCCGAGGATGAACAGACTCCTGTGCATGATAAACTCTCAACTACAAAAGCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAATTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACCATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAATCCGGTAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGACGCGCTTCAAAAGCAATTGAATGAAGATGCTAATGAGGTCAAGGCCAAAGGGGATAGCTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAACAAGAAGAAAAAATATGATAGTGAAAGTGATAACGAGAAAGAACCTCAAATAAGATCTGCCAGCAACAAGCATGATATGAATAGCACTGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAGTAAGTCAAATAAAAATAAAATGTTTGATAGTAACGTTATCAGTGCTCGGTCTAAAATCCAGAATGCTACCCATCACTCAATTGACGGAATAGAAAAGTCATCTGGATGTGATCCTCGTATACATGGACGGAAGAGTAATAAGCACGGAAGAAGTACCTTGTTAGTTCGCAGTTCTAATGAAAGATCAAATTCAGAATCTGATGGCTTTGTCCCATATATGGGAAAACGGACAGTTCTTGCCTGGTTGATTGACTCAGGAGCAGTAGAGTTAAGCCAAAAAGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGTATACATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATTTTTATGGAATCTGGAGTTTCTCTTCTACAGTGCCAAATAGATGCATGGAATAGACAAGAGAATTCTGAAAAAATTAGTTTCCATTCTGTAGATATTAATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGCTGATGGAGGGGATTTAATCTGTTGTGATAGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATGCTTCCTCTTGGAGAATGGAATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGTACTTTCTGAAAAAGATGATGCATCGGTTCCTATCCTACATACCTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCGCTGAGGAGATGGATGCCCTTCCTAATAACCTCAGTACATCAGACCTTTCTTTTTGTGGGAGAGAGTGCAGAGAGCTTTCTGAACAATTGAAGAAGTATCTTTGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGACGCAGCTTGCAGAGGAATTACTCAGAGGGTAGAATGCAATTCAAAGTTGGCTATTGCGCTGACTGTGATGAATGAGTGCTTTTTGCCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACATTTTATATAATAGTGGATCGAACTTTAATCGGTTGAACTATGGTGGCTTTTACACTGCTATCTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCACGGAACTAAGATAGCTGAGATGCCATTCATTGGAACTCGTCATATATACAGGCGTCAGGGGATGTGTCGTCGGCTTTTCTCTTCCATTGAATTGGCCCTTTGCTCTATGAAGATCGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACACATGCATGGACAACAGTTTTTGGCTTCACACATCTGGACGAATCACTCAGGCAAGAAATGAGGTCACTGAATATGGTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGTTAGTGGAAAGTAATAAAACTGCAGGTTCTGAGAAAATCGGACATGGAGACGACGAATTTATCCATACCAAAATGGGAAATAGGTCAGATATGGGTTCTTCAACTCCACAAGATCCTCGTGGAAGTGATGATGTTAGTTCAAATCCTGTTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAATATCTAAACCAAGTTTTGGTCGATGGGATTCTCTGTTCGAAATCTCATTCTGAGGAAATGGTGTCTGATTCGGTTTCAGAAAAATGTGTTTCTCCTTCTAGAACTAGTCAGAGTGAACTAAAAATGAAGAATAAAGTGGTGGCTGCTCCTCCTGTTGATAAATTAAATCCCACTTCACTGAGAAATCACCCAGTAGATATTACAAATGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTTCAGTAGAAAATCTTGACAAATGTCAGTCGTTCACTGCTATGAATTGTGATTCGTTGGAGCTTGACGTTAGTCCAGTTTTGAATTCTCGAAAGTCAGACAATACTCCACCTACTAAAGAGGCTTATATGAATGACACTCTTGAAACTGTTACTTCAGGGATTTTATCAGAAGAGAATATTATTCCAAAGCGAAGTGATCAAAATGTAGATGTCTCCATTTCTGCTCTCAATCATGCCGATGACAGTTTGTTGCAACTGGGATCTGGTTCCAACTCTGAATTTGGATGTGAAAATGGGAAGGATTTGATTCTGAACCGAATAGTTGCTTCCGATGAAACATGTCTTGATGAAAATGGCTTAAATGCTTCCGATGATGGTTCCGAGACTGTTGTGGTCTAA 3852 0.4146 MESEVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRTNISVSESDSGSSDELLIPPGRRLGSETIRLCNGLAASERGGSEISRKRDRMERIRGADKGLEQWVTKRSKLDAYNFEEYDGMDVENMRRRHLDGDGVGFGGRSFMGSEHATRSGIDRELKNGSSGRLLDKRNNSYVDRPSGLFPGDHVDHIRFKSNRDGVRVPIPLQREKFNSDESIRVQGKNGVLKVMINKKKVCGQSKQYYDHHKPVESRRRLETEEPIKRMKTEETAKWNVPTRPSSYVETKPVEKPGLLKRPEKKQIASRKSLSSKDSKGDEGDSDNSDTSLNPGVRNAEAAKPVKKMFSEDEQTPVHDKLSTTKAKEGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPVGTAYWSIIKAYDALQKQLNEDANEVKAKGDSSSFAPIADEVLSQLTRKTRKKMEKELKNKKKKYDSESDNEKEPQIRSASNKHDMNSTDSDNNEEKLSSFIKQGSKSNKNKMFDSNVISARSKIQNATHHSIDGIEKSSGCDPRIHGRKSNKHGRSTLLVRSSNERSNSESDGFVPYMGKRTVLAWLIDSGAVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFMESGVSLLQCQIDAWNRQENSEKISFHSVDINGDDPNDDTCGICADGGDLICCDSCPSTFHQSCLNIQMLPLGEWNCPNCTCKFCGIASVLSEKDDASVPILHTCNLCEKKYHDSCAEEMDALPNNLSTSDLSFCGRECRELSEQLKKYLCTKHELEAGFSWSLIHRTDEDSDAACRGITQRVECNSKLAIALTVMNECFLPVIDRRSGINLIRNILYNSGSNFNRLNYGGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSSIELALCSMKIEKLVIPAIAELTHAWTTVFGFTHLDESLRQEMRSLNMVVFPGIDMLQKLLVESNKTAGSEKIGHGDDEFIHTKMGNRSDMGSSTPQDPRGSDDVSSNPVNETNDECSDASQYLNQVLVDGILCSKSHSEEMVSDSVSEKCVSPSRTSQSELKMKNKVVAAPPVDKLNPTSLRNHPVDITNVQALVQETACSDPCSVENLDKCQSFTAMNCDSLELDVSPVLNSRKSDNTPPTKEAYMNDTLETVTSGILSEENIIPKRSDQNVDVSISALNHADDSLLQLGSGSNSEFGCENGKDLILNRIVASDETCLDENGLNASDDGSETVVV* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0099 1283 Coils Coil 462 489 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 1016 1031 - -
Vra11g0099 1283 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1199 - -
Vra11g0099 1283 SUPERFAMILY FYVE/PHD zinc finger 696 753 IPR011011 -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 32 69 - -
Vra11g0099 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 789 IPR013083 -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 297 329 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 469 498 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 1015 1063 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 469 528 - -
Vra11g0099 1283 PANTHER PHD FINGER FAMILY PROTEIN 1 1199 - -
Vra11g0099 1283 Coils Coil 427 447 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 552 591 - -
Vra11g0099 1283 ProSitePatterns Zinc finger PHD-type signature. 708 747 IPR019786 -
Vra11g0099 1283 SMART PHD_3 749 822 IPR001965 -
Vra11g0099 1283 SMART PHD_3 707 748 IPR001965 -
Vra11g0099 1283 ProSiteProfiles Zinc finger PHD-type profile. 705 750 IPR019787 -
Vra11g0099 1283 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 888 982 IPR016181 -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 499 528 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 1033 1063 - -
Vra11g0099 1283 Pfam Tify domain binding domain 630 680 IPR032308 -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 575 590 - -
Vra11g0099 1283 Pfam PHD-finger 708 750 IPR019787 -
Vra11g0099 1283 CDD PHD2_CHD_II 708 747 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 248 279 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 347 382 - -
Vra11g0099 1283 MobiDBLite consensus disorder prediction 248 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0099 Vra-Chr11 697280 703188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0099 6 1013 PHD Transcription Factor Family AT4G14920 49.131 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra11g0099 TDBD 4.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0099 - - gmx:102666194 1971.44