Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0098 ATGGAATCAGGCGTGAGATCGAGTAATTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATCGTTCGAAAGAAAGGGGACGGATTGGGTGCTACTGCTTCCACGTCTCGGAAGCTCTATGAATCCAAGAAAAGGGCCAATATCAGCGTTTCCCTGAGTGATTCTGGATCAAGCGACGAGCTGCTGATTCCTCCTGGTAGAAGGCTCGGTCCCGAGACTATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGATGGGAATGAAGTTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGTAACTGGGGAAGGTATTGCGGCGGAGAAAGGTTTGGACCCGAGGGACAGGAAGCGTAGTAAGTTGGATGTGTATGATTTTGATGAATATGATGGAATGGGTGTGGAAAACACAAGGAGGAGGCATTTAGATGACAATGGAGTTGGTCACGGAGGAGGAAGGTTTATGGGACCAGTGCACGCTGCTAGAAGTGGCGTTGATAGGGAATTCAAAGCAGGTTCAAGTGGACGAGTTCTCGATAAGAGAAAGGACTCCTATGGTGACAGGCCCAGTGGCTTGTTTCCGGTGGATGATGTTGATCACAGTAGGTTCAAGATGAACAGGGATGGTACTCGGGCACCTGTATCCCCGCAGAAGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCCTGGGCCATCAGAACAGTATTATGATCATCGCAAGCCTGTAGAAAGCAGGCAAAGGTTAAGAACTGAAGAGCCTACCAAGAGGATAAAGGCTGAAGAGACTAAGAGGAATGTTCCAAGTCGTCCTTCATCATACACGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGGCCAGAAAAGAAACGGATAACGTCCAAAAAATCCTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTAACGCATCACTGAATCCGGGAATAAGGAATACTGAAACACATAAGCCTACAAAAAAAGTAATTTCGGAGGATGAGCAGACACCTGTGCACGAAAAACTCCCCACCACAGGAACAAAAGATGGGAAAATCAAGCGTGGCAGTGGTACAGAAAAGCAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAACCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAGTTGAATGATGACGCTAATGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTTCTCCTATTGCAGATGAGGTGCTTAGTCAGCTAACAAGGAAAACTAGAAAGAAAATGGAGAAAGAAATGAAAAAGAAAAAGAAAAAATATGACAGTGAAAGTGGTAATGAAAAAGAGCCTCAAAGAAAGAGATCTGCCAGCAACAAGTGTGATATGAATAGCACGGATAGTGACAGCAACGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAACGTCCGAAAATATCATTACCAGTGCTCGCACTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATGGAAAAATCATCATTTGGAGGTGATCCTCACATACACGGACGGAAGAGTAAAAAACATGGAAGATGCACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCGGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAGCTAAGCCAAAAGGTTCAGTACCGCAGACGGAAAAAGGTCCTGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACTGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAACCATATCAAAATATATATTTGGAATCCGGTGTTTCTCTTCTACAATGCCAAATAAATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTGTGTGGATATTGATGGTAATGATCCAAATGATGATACATGCGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATCCAAATGCTTCCTCCTGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCACAGCCACTAGGACTTCTGAAAAAGATGATGCATCTGTGTATGTCCTACGGACATGCAACTTATGTGAGAAAAAATATCATGACTCTTGCTCTGAGGAGATGGATACCCATCCTAATAACTTGAATACTTCAAACCTTTCTTTCTGTGGGAAAGAGTGTAAAGAGCTTTCTGAACGCTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGGGGGGTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACCCAGAGAGTGGAATGCAATTCAAAGTTGGCTATTGGACTGGCTGTGATGGATGAATGCTTTTTACCTGTTATTGATAGGAGAAGTGGGATCAATATAATCCGCAATGTTTTATATAATACTGGGTCAAACTTTAGTCGGTTGAGCTATGGTGGATTTTACGCTGCTATTTTGGAAAAGGGGGATGAAATAATTGCTGCGGCATCTATCAGGTTGCATGGAACTAAGGTAGCAGAGATGCCATTCATTGGAACTCGCCATGTATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTACTGCCATTGAATCGGCCCTTTGCACTCTGAAAGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACGCATACATGGACAACGGTTTTTGGCTTCACACGTCTAGACAATTCACTCAGGCAAGAAATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAAAAGCGGTTGGTTGAGCAAGGAAAACATGAAGGTTCTGAGAAAATGGGAAATGGAGGCAATGATTTTATCCATACCAAAATGGGAAATGGGTCAGATATGGGTTCTTTAACTCAACAAAATCCTCATGGAAGTGATGATGATAGTTCAAATCCTGCTAATGAGACAAATGATGAATGCAGCGATGCTTCTCAAGAACTTAACAATCAAGTTATGGTTGATGGAACTCTCAGTTCCAAATCTGATTCGGAGGAAATGGTGTCTGCTTCAGTTTCAGATAAATGTATTTCTCCTTCTAGGACTAGTCACAGTGCACTAGAAATGAAGAATAAAGTGGATGCTGCTCCTCCTGTTGATAAATTAAATCCTCCTTCAAAATGCCAATCCATTTCTCCTAATGACACATCTGTGAGTGACTCAGAAGATATTCCAAATATTAAAGGTTTGGTTCAGGAAACTTCTTCGTCTGATCCATGTTCACAGGAAAACCTGGACAAGAAATGTCACTCACTCACTGCTATGAATTGTGACTCGTCAGAGCCTGACATTAAACCAGTGGTGGGTTCTCCAAAGGCAGGCGATACTTCACCTACTAAAGAGGTTCGTATGGATGACCCCCTTGAAGCTGTTTCTTCAAGGAATTTATTGAAGGGGAATGATCGGAATATAGATGTCTCCAGTTCTGCTCTCAAACTTGCCGATAAGAGTTTGTTGCAGGTAGGATCTGATTCCAAAAATGAAATTGGATGTGAAAATGAGAAGGATGGACGTGCTGTAAAAGCTTCTGGCGATAGTTCTGATACTGTTCTGTTCTAG 3846 0.429 MESGVRSSNSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANISVSLSDSGSSDELLIPPGRRLGPETIRVCNGLAASERDGNEVSRKRDRVERIRVTGEGIAAEKGLDPRDRKRSKLDVYDFDEYDGMGVENTRRRHLDDNGVGHGGGRFMGPVHAARSGVDREFKAGSSGRVLDKRKDSYGDRPSGLFPVDDVDHSRFKMNRDGTRAPVSPQKEKFNSDESIRVQGKNGVLKVMVNKKKVPGPSEQYYDHRKPVESRQRLRTEEPTKRIKAEETKRNVPSRPSSYTETKPVEKPRLVKRPEKKRITSKKSLSSKDSKGDEGDSDNSNASLNPGIRNTETHKPTKKVISEDEQTPVHEKLPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDANEVKAKGDSSSFSPIADEVLSQLTRKTRKKMEKEMKKKKKKYDSESGNEKEPQRKRSASNKCDMNSTDSDSNEEKLSSFIKQGSKSMKNKTSENIITSARTKIQNATHHSSDGMEKSSFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQINAWNRQEHSEKIGFHCVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCTNCTCKFCGTATRTSEKDDASVYVLRTCNLCEKKYHDSCSEEMDTHPNNLNTSNLSFCGKECKELSERLKKYLGTKHELEGGFSWSLIHRTDEDSEAACRGITQRVECNSKLAIGLAVMDECFLPVIDRRSGINIIRNVLYNTGSNFSRLSYGGFYAAILEKGDEIIAAASIRLHGTKVAEMPFIGTRHVYRRQGMCRRLFTAIESALCTLKVEKLVIPAIAELTHTWTTVFGFTRLDNSLRQEMKSLNMMVFPGIDMLQKRLVEQGKHEGSEKMGNGGNDFIHTKMGNGSDMGSLTQQNPHGSDDDSSNPANETNDECSDASQELNNQVMVDGTLSSKSDSEEMVSASVSDKCISPSRTSHSALEMKNKVDAAPPVDKLNPPSKCQSISPNDTSVSDSEDIPNIKGLVQETSSSDPCSQENLDKKCHSLTAMNCDSSEPDIKPVVGSPKAGDTSPTKEVRMDDPLEAVSSRNLLKGNDRNIDVSSSALKLADKSLLQVGSDSKNEIGCENEKDGRAVKASGDSSDTVLF* 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0098 1281 Coils Coil 467 494 - -
Vra11g0098 1281 Pfam PHD-finger 715 757 IPR019787 -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1088 1152 - -
Vra11g0098 1281 SUPERFAMILY FYVE/PHD zinc finger 705 760 IPR011011 -
Vra11g0098 1281 PANTHER PHD FINGER FAMILY PROTEIN 1 1195 - -
Vra11g0098 1281 CDD PHD4_NSD 715 754 - -
Vra11g0098 1281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 812 IPR013083 -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 469 537 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1257 1271 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 177 212 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 551 578 - -
Vra11g0098 1281 Pfam Tify domain binding domain 637 687 IPR032308 -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 253 287 - -
Vra11g0098 1281 CDD NAT_SF 910 969 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 333 347 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1252 1281 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 505 537 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 316 332 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1187 1223 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1088 1115 - -
Vra11g0098 1281 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
Vra11g0098 1281 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 901 971 IPR016181 -
Vra11g0098 1281 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1018 1073 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 177 387 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1041 1073 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 348 387 - -
Vra11g0098 1281 Coils Coil 432 452 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 1134 1152 - -
Vra11g0098 1281 SMART PHD_3 714 755 IPR001965 -
Vra11g0098 1281 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1195 - -
Vra11g0098 1281 MobiDBLite consensus disorder prediction 483 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0098 Vra-Chr11 688262 696256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0098 4 1015 PHD Transcription Factor Family AT4G14920 49.033 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra11g0098 TDBD 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0098 - - gmx:102666194 1984.15