Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0093 ATGTCTTTGGCTATCTTTTTCCCTTCCATTCTCCTACTACTTTCATTTCTGAATGGTTTCCATGCCATTGTACAACCAAACACCAGCATCACTGCTGGATCAAACTCTACCTGGAAGTCACCCTCGGCTGATTTTGAATTTGGATTCCTCCATCTTCCCAGTGGTCTCTTTCTTGTGGGAATATGGTTTGCGAGAATCTCAGATATAACACTAGCATGGTACTTCTCTCCCCCTGTGGAACCAAATTCCCAAATCCGATTCACTTCTGCAGGAAACCTTGTGGTAGCCTACCAAAACGGAACTACTGCTATGACCATATACAATTCTGCAGAAGGCGATGCTGCAACTTCTGCCTACATGCAAGATGATGGAAATTTTGTCATCAAGGACTCCAACTTAGTATCTGTCTGGCAGAGTTTCAATTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGCTGAGTACTAAAACCCTCTTTTCCAAAGGGGGAGGACCTTCGAACTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGATGATGGAAACTTGGTGCTCAAAGCGTACCTGTGGGCAGACCCTGCATACTGGTACACTTCACCCATAACCGCCAATATGACATTGGTGTTTAATGCTACCACTGCTCTCATGTACCGTGTCGACGACGCTGGGAACATCTTCAACCTAACTGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGGAATTTCCAGCAATATTCTTATCACAAGAGGAATGGGAGCGGTTGGAGGAGGGTTTGGAGAGCCGTGGAGGATCCTTGCAGAGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAATCAAGTGTGAGTGTATTCCGGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGCTGTGATAAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCTATTTTGATACTCATCTTGTTAGCTTAGCTGGCGTTGACTTAGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACTTCCACATGTGCTAAGAAGAGACTGCCCTTACTGAATGCCAGAAATAGCTCTTCTTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGGACATCTGAACTTCCTAAGAAGAAAAGTTTTAACGTAAGAGTCTTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCACTTGCTGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATTTGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTTACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAAAGTCTATCGTGGTGCTTTAGTAATAGGTGATGCAGAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGAGAAAAGTGACAGTGAATTCACGACTGAGCTCAAAATTATTGGGCGTACTCATCACAGAAATTTGGTGAGGCTTTTGGGGTTTTGCATTGAGAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCAAATGGTGCCCTCTCTAGTTTTTTGTTTGGAGAGGGAGAAAGGCCTCAATGGGGTCAGAGAATTGAAGTGGCTCTTGGAGTAGCAAGAGGCTTGCTATACTTGCACGAAGAGTGCAACACCCAAATCATACATTGTGACATAAAGCCAGAAAATGTGTTACTTGACGCCAATTACACAGCAAAGATTTCAGATTTTGGACTGTCGAAGCTTTTGAACAAAGATCAAACTAGAACAGTCACTAAGTTAAGAGGGACAATGGGATACATGGCACCTGAATGGCTAAAGAGTGCACCAATAACTGCTAAAGTTGACATATACAGCTTTGGAGTTATGTTATTGGAGATTATTTGCTGCAGGAGGCACGTTGAGATTTGTGAGGATGGAAAAGACAGTGAAGATTACGATGTGGTTCTTGCAAGTTGGGTTTTAAGGTGTGTGGTGTCCAAGGAACTAGAGTTAGTAGTGAGACATGACACGGAAGTGTTGAATGATTTCAAGAGGTTTGAGGAAATGGCTTTGGTTGGACTATGGTGTGTTCATCCAAATCCTGCTTTAAGACCTTTGATGAAGCAAGTGATGCAAATGCTAGATGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTCATGAGCAGATCATGGTAGATTAA 2340 0.4282 MSLAIFFPSILLLLSFLNGFHAIVQPNTSITAGSNSTWKSPSADFEFGFLHLPSGLFLVGIWFARISDITLAWYFSPPVEPNSQIRFTSAGNLVVAYQNGTTAMTIYNSAEGDAATSAYMQDDGNFVIKDSNLVSVWQSFNSPTNTILPGQTLLSTKTLFSKGGGPSNYSLGSFMLQMQDDGNLVLKAYLWADPAYWYTSPITANMTLVFNATTALMYRVDDAGNIFNLTEITPTPVEDYYHRATIDENGNFQQYSYHKRNGSGWRRVWRAVEDPCRVNAICGVYGLCTSPDNESIKCECIPGYIPLDDQDVSKGCHPPAVINYCAENNFKLQVFDDTDFYFDTHLVSLAGVDLESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLLNARNSSSSKGLKALLKVANRIESGTSELPKKKSFNVRVFLKVLVAVTATLACFFGALAVYYHPFTRRLTRKKKHLNATAIGINFREFTFQELHEATDGFTKILGKGASGKVYRGALVIGDAEIDVAVKKLEKKIEKSDSEFTTELKIIGRTHHRNLVRLLGFCIESSHRILVYELMPNGALSSFLFGEGERPQWGQRIEVALGVARGLLYLHEECNTQIIHCDIKPENVLLDANYTAKISDFGLSKLLNKDQTRTVTKLRGTMGYMAPEWLKSAPITAKVDIYSFGVMLLEIICCRRHVEICEDGKDSEDYDVVLASWVLRCVVSKELELVVRHDTEVLNDFKRFEEMALVGLWCVHPNPALRPLMKQVMQMLDGTVEVGVPPLVHEQIMVD* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0093 779 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 772 - -
Vra11g0093 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vra11g0093 779 Pfam Protein kinase domain 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0093 779 PIRSF SRK 1 778 IPR024171 GO:0004674
Vra11g0093 779 Gene3D - 144 282 - -
Vra11g0093 779 Pfam D-mannose binding lectin 79 156 IPR001480 -
Vra11g0093 779 Gene3D Transferase(Phosphotransferase) domain 1 563 766 - -
Vra11g0093 779 Pfam S-locus glycoprotein domain 238 306 IPR000858 GO:0048544
Vra11g0093 779 Gene3D Phosphorylase Kinase; domain 1 456 562 - -
Vra11g0093 779 SUPERFAMILY Protein kinase-like (PK-like) 463 760 IPR011009 -
Vra11g0093 779 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Vra11g0093 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 202 IPR036426 -
Vra11g0093 779 ProSiteProfiles Protein kinase domain profile. 484 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0093 779 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 772 - -
Vra11g0093 779 SMART blect_4 29 143 IPR001480 -
Vra11g0093 779 ProSitePatterns Protein kinases ATP-binding region signature. 490 516 IPR017441 GO:0005524
Vra11g0093 779 CDD STKc_IRAK 490 762 - -
Vra11g0093 779 SMART serkin_6 484 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0093 779 Gene3D - 16 142 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0093 Vra-Chr11 660323 663085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0093 407 765 Receptor kinase-like Gene Family AT5G45780 36.538 5.43e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra11g0093 Pkinase 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0093 - - gmx:102662509 1212.59