Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0092 ATGAATGAATGTATATATCATCACGATACAGCTTTAGTTTTGATTGCATTGCGTAGCTCTTTCCTACCAAAAATGGCTATCCAAATTCTTCTCTTTGTTGCCTTCCTTCTATGTTCCTTTGCTTCTGGGAATGAGGTTAACTCAATCCAACTGGGGTCCACCATCTTGGCTGGCACCGATTCATCTTGGCGATCATCCTCTGGTGATTATGCCTTTGGATTCTATCGCCTCACTAGTGGACGCTATCTTGTTGGAATTTGGTTTGACAAAATTCCAAATAAAACGTTAGTTTGGTCTGCAAACCGTGACAACCTAGTTGAAATTGGATCATACATCAATCTCACACGAAGTGGGCAGTTTGTGCTCCAACCTCTCAACGGGGCTTCATTTCCCATCTACGAAGGAACAAACACAGCATCAGCAGTGATGCAGAATGACGGGAATTTCGTCTTGAAGAATGCACTTTCTAACGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATGCCAGTCGAAAGCTCTACTCCAATGCCAATGGATCAGTTGACTACTCAACTGGACAATATAGTTTGGAGATTCAGCAATCTGATGGCAACATTCTTCTTAAAGCTTACCGGTTCACGGATTCTGCCTACTGGTGGAGTGGCACTGCCCAAAACACAGGTGTGAGAATTATTTTCAATAGCACAACAGCTTTTCTTTACGCGGTCAATGCCACCAATCAAATTATATATGACATGATTACCGAGGTAGAGGGTGCAATCGAAGATTACTATCACCGTGTGTTGGTGGATGACAAAGGAAACTTTCAGAAGTTGATTTACCACAAAGAAAATGGAGATGAGTGGAGATCTGTCTGGCAGGCAGTAAAAGAGCCTTGCACTGTGACTGCTCTTTGTGGGGTGTATGGCTTCTGCAATACAACTGATTCTGAAACCCATTCATACAGTTGTGGATGCTTACCTGGCTATACTCCTTTGGATCCAACAGCACCTTCCAAGGGCTGCTATCTCAGTGAGGTCAAGGACTTGTGTCCTGCAAATTCTTCTGGCTCTAACTTTATGGTGGAAGCGAAAGAGATCCAAGATGCTGATATACCAAACGAGGGCTACGTTTCTTTTGATCTAGTAGTCTTGAATAACATGGATCTGGATGGATGCAAGAAAGAATTGTTGGATGATTGTCTCTGCATGGCTGCAGTTTCAAAGGGCAGTGATTGCTATAAGAAAAAATGGCCAATTATAAATGCCGTAAGAACCATCCCTAAAACTAATAATAGTGTGATACTGGTTAAAGTTCCTCTGGTTGCCAATGATAAGGAATCATCATCTTTGGTTATTTTGATAGTGGCTCTCATCTCTTGTTCACTACTTGCTGCATTGTTTGTAGCTACTACCATATATCATCACCCCGTTTTTCTGTATATCTTACATAAACAGGCACCACCAAAGCCCAAGCCAAAGCCGATGGATATCAATCTGAAGGCATTTTCATTCCAACAGCTGAGAGAAGCAACAAACGGATTCAAAGACAAACTTGGTCGAGGAGCCTATGGTACAGTGTATGGTGGGGTTTTAAACTTGGAGGATCAACAGGTTGATGTTGCTGTCAAACAACTTGAGCAAGTAGACGACCAAGGTGATAAAGAATTCGTGACAGAAGTTCAAGTTATTGCTCTCACTCATCACAGAAATCTTGTTGGGCTATTGGGCTTTTGCAATGAACAGAGTCATAGGCTTCTGGTCTATGAGAAAATGGAAAAAGGAACACTATCCAACTTCCTTTTCGGGGAAGGGGATAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGCTTGTTATATCTGCACGAAGAGTGTGACAATCAAATCATCCACTGTGATATAAAGCCTCAGAATGTTCTGCTTGACTCTAGTTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTAATGAAGGATAAAACTCGAACAAACACCAATGCTAGAGGAACAGTGGGATATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTAGATATCTACAGCTTTGGTGTGATGTTGTTGGAAATCATATTTTGCAGAAAACACATCGAGTTGCATCAAATTGAGGATGAAACAATGGGTGATGACTTGATACTAATAGATTGGGTTATGTATCTGGCAAAAGAAAACAATTTAAGACCACCAGTTATTCATCATCTTGAAGTTGAAAGTGATATCAAGAGGTTTGAGAGAATGGCAATGGTTGGATTATGTTGTGTAAACCCCAATCCAACTCTTCGACCATCTATGAAAATTGTGGTACAGATGCTGGAAGGAAATGTCGAAGTGGGAGTCCCAACAATCGACTCATAG 2415 0.4149 MNECIYHHDTALVLIALRSSFLPKMAIQILLFVAFLLCSFASGNEVNSIQLGSTILAGTDSSWRSSSGDYAFGFYRLTSGRYLVGIWFDKIPNKTLVWSANRDNLVEIGSYINLTRSGQFVLQPLNGASFPIYEGTNTASAVMQNDGNFVLKNALSNVIWQSFDSPTDTLLLGQTLNASRKLYSNANGSVDYSTGQYSLEIQQSDGNILLKAYRFTDSAYWWSGTAQNTGVRIIFNSTTAFLYAVNATNQIIYDMITEVEGAIEDYYHRVLVDDKGNFQKLIYHKENGDEWRSVWQAVKEPCTVTALCGVYGFCNTTDSETHSYSCGCLPGYTPLDPTAPSKGCYLSEVKDLCPANSSGSNFMVEAKEIQDADIPNEGYVSFDLVVLNNMDLDGCKKELLDDCLCMAAVSKGSDCYKKKWPIINAVRTIPKTNNSVILVKVPLVANDKESSSLVILIVALISCSLLAALFVATTIYHHPVFLYILHKQAPPKPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYGGVLNLEDQQVDVAVKQLEQVDDQGDKEFVTEVQVIALTHHRNLVGLLGFCNEQSHRLLVYEKMEKGTLSNFLFGEGDKPSWESRVRIVLEIARGLLYLHEECDNQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTNTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRKHIELHQIEDETMGDDLILIDWVMYLAKENNLRPPVIHHLEVESDIKRFERMAMVGLCCVNPNPTLRPSMKIVVQMLEGNVEVGVPTIDS* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0092 804 SMART serkin_6 515 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0092 804 SUPERFAMILY Protein kinase-like (PK-like) 494 792 IPR011009 -
Vra11g0092 804 CDD STKc_IRAK 521 793 - -
Vra11g0092 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 225 IPR036426 -
Vra11g0092 804 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 26 802 - -
Vra11g0092 804 SMART blect_4 54 166 IPR001480 -
Vra11g0092 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vra11g0092 804 Pfam S-locus glycoprotein domain 264 334 IPR000858 GO:0048544
Vra11g0092 804 Gene3D - 45 165 IPR036426 -
Vra11g0092 804 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 802 - -
Vra11g0092 804 ProSiteProfiles EGF-like domain profile. 298 338 IPR000742 -
Vra11g0092 804 ProSitePatterns Protein kinases ATP-binding region signature. 521 546 IPR017441 GO:0005524
Vra11g0092 804 ProSiteProfiles Bulb-type lectin domain profile. 46 164 IPR001480 -
Vra11g0092 804 Gene3D - 167 307 - -
Vra11g0092 804 Pfam Protein kinase domain 518 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0092 804 Pfam D-mannose binding lectin 95 181 IPR001480 -
Vra11g0092 804 ProSiteProfiles Protein kinase domain profile. 515 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0092 804 CDD B_lectin 65 166 IPR001480 -
Vra11g0092 804 Gene3D Transferase(Phosphotransferase) domain 1 594 797 - -
Vra11g0092 804 PIRSF SRK 18 804 IPR024171 GO:0004674
Vra11g0092 804 Gene3D Phosphorylase Kinase; domain 1 490 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0092 Vra-Chr11 656944 659617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0092 455 802 Receptor kinase-like Gene Family AT1G53440 38.810 7.76e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra11g0092 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0092 - - pvu:PHAVU_002G046100g 1352.81