LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0091	ATGTCTTTGGCTATCTTTTTCCCTTCCATTCTCCTACTACTTTCATTTCTGAATGGTTTCCATGCCATTGTACAACCAAACACCAGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCTCAGATATAACACTCGCATGGTACCTCTCTCCCCCTGTGGAACCAAATTCCCAAATCCAATTCACTTCTGCAGGAAACCTCGTCGTAGTACACCCAAATGGGACTACTGCTAACACCATATACGATTCAGCAGAAGGCGGTGCTGCAACTTCTGCTGACATGCAAGATGATGGCAATTTTGTGATCAAGGACTCCAACTTAGTGTCTGTGTGGCAGAGTTTCAACTATCCAACCAACACTATCTTACCGGGCCAAAGCTTGCTGAGTACTAAAACCCTCTATTCCAAGGGCATAGGACCTTCAAACTACTCGTTGGGAAGCTTCGTGTTACAAATGCAAGATGATGGCGACTTGGTGCTCAAAGCGTACAAGTGGTTAGACCCTCCATACTGGTACATTTCAACCATAACCTCCAATGTGACTTTGGTGTTTAATGTTACCACTGCTCTCATGTACCTCGTCGGCGGCACTGGGAACATCTACTCTATAACCAACACCACTCCAACCCCGGTGGAGGATTATTACCATCGTGCCGTAATAGATGAGAATGGGAATTTCCAGCATTATGCATATCACAGAAGGAACGGGAGCGGGTGGAGCAGGGTTTGGAGAGCAGTGGAGGATCCCTGCAGAGTGAATGTTGTCTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAGTCAAGTGTCAGTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATATTTCAAAAGGGTGTCGCCCACCAGCTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACAGATTTCCATTTTGATACTCATCTTGTTAGGTTAGCTGGTGTTGACTTCGAAAGTTGTAAGAAGGACGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCAACATGTGCAAAGAAGAGACTGCCCTTACTGAATGCTAGAAATAGCTCTTCTTCAAAGGGACTGAAAGCACTGCTTAAGGTTGGTAACAGGATTGAGTCTGGAACATATAAACATCCAAAGAAGAAATTTTTCAATGTAAGAGTCCTCTTGAAGGTTCTTGTTGTAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGGAGACTGACAAGAAAAAAGAAGCATCTGAACGCAACAGCTATCGGAATCAACTTCAGAGAATTTACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAGAGTGTACTGTGGTGCTTTAGTGATAGATGATGCAGAGATTGATGTAGCAGTAAAGAAACTGGAAAAGAAAAAAGAGAAAAGTGAAAGTGAATTCACGACTGAGCTCAAAATTATTGGTCTTACCCATCATAGAAATTTGGTGAGGCTTTTGGGCTTTTGCACTGAGAGTGACCATCTGATTCTTGTGTATGAGTTGATGCCAAATGGCGCCCTCTCTAGTTTTTTGTTTGGAGAGGGAGAAAGGCCTCAATGGGGGCAGAGGATTGAAATGGCTCTTGGAATCGCACGAGGCTTGCTATACTTGCACGAAGAATGCAACACCCAAATCATACATTGCGACATAAAGCCCGAAAATGTGTTACTTGATGCCAATTACACAGCAAAGATTGCAGATTTTGGGCTGTCGAAGCTTTTGAACAAAGATCAAACTAGAACAAACACTAACTTAAGAGGAACGATAGGATACCTAGCACCTGAATGGCTAAGGAGTGGACCAGTAACTGCTAAAGTTGACATATACAGTTTTGGGGTTATGTTATTGGAGATTATTTGTTGCAGGAGGCACGTTGAGATTTGTGAGGATGGAAAAGACAGTGAAGATTATGATTTGGTTCTTTCAAATTGGGTTTTAAGGTGTGTGGTGTCCAAGGAACTAAAGCTAGTGGTGAGAAATGACTCGGAAGTTTTGAATGATTTCAATAGGTTTGAGGAAATGGCCTTGGTTGGACTATGGTGTGTTCATCCAAATCCTGCTTTAAGACCTCTGATGAAGCAAGTTATGCAAATGCTAGACGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTTATGAGCAGATGATGGCAGATCATGGCCTGTAG	2349	0.4193	MSLAIFFPSILLLLSFLNGFHAIVQPNTSIXXXXXXXXXXXXXXXXXXXXXXXSGLFLVGIWFGRISDITLAWYLSPPVEPNSQIQFTSAGNLVVVHPNGTTANTIYDSAEGGAATSADMQDDGNFVIKDSNLVSVWQSFNYPTNTILPGQSLLSTKTLYSKGIGPSNYSLGSFVLQMQDDGDLVLKAYKWLDPPYWYISTITSNVTLVFNVTTALMYLVGGTGNIYSITNTTPTPVEDYYHRAVIDENGNFQHYAYHRRNGSGWSRVWRAVEDPCRVNVVCGVYGLCTSPDNESVKCQCIPGYIPLDDQDISKGCRPPAVINYCAENNFKLQVFDDTDFHFDTHLVRLAGVDFESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLLNARNSSSSKGLKALLKVGNRIESGTYKHPKKKFFNVRVLLKVLVVVTATLACFFGALAVYYHPFTRRLTRKKKHLNATAIGINFREFTFQELHEATDGFTKILGKGASGRVYCGALVIDDAEIDVAVKKLEKKKEKSESEFTTELKIIGLTHHRNLVRLLGFCTESDHLILVYELMPNGALSSFLFGEGERPQWGQRIEMALGIARGLLYLHEECNTQIIHCDIKPENVLLDANYTAKIADFGLSKLLNKDQTRTNTNLRGTIGYLAPEWLRSGPVTAKVDIYSFGVMLLEIICCRRHVEICEDGKDSEDYDLVLSNWVLRCVVSKELKLVVRNDSEVLNDFNRFEEMALVGLWCVHPNPALRPLMKQVMQMLDGTVEVGVPPLVYEQMMADHGL*	783

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0091	782	Gene3D	Phosphorylase Kinase; domain 1	456	562	-	-
	Vra11g0091	782	Gene3D	Transferase(Phosphotransferase) domain 1	563	767	-	-
	Vra11g0091	782	PIRSF	SRK	47	780	IPR024171	GO:0004674
	Vra11g0091	782	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	606	618	IPR008271	GO:0004672\|GO:0006468
	Vra11g0091	782	Coils	Coil	30	30	-	-
	Vra11g0091	782	Gene3D	-	146	277	-	-
	Vra11g0091	782	SUPERFAMILY	Protein kinase-like (PK-like)	463	760	IPR011009	-
	Vra11g0091	782	Pfam	Protein kinase domain	488	758	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0091	782	Gene3D	-	73	145	IPR036426	-
	Vra11g0091	782	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	6	772	-	-
	Vra11g0091	782	PANTHER	SERINE/THREONINE-PROTEIN KINASE	6	772	-	-
	Vra11g0091	782	ProSiteProfiles	Protein kinase domain profile.	484	764	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0091	782	ProSiteProfiles	Bulb-type lectin domain profile.	8	141	IPR001480	-
	Vra11g0091	782	Pfam	D-mannose binding lectin	78	157	IPR001480	-
	Vra11g0091	782	ProSitePatterns	Protein kinases ATP-binding region signature.	490	516	IPR017441	GO:0005524
	Vra11g0091	782	SUPERFAMILY	alpha-D-mannose-specific plant lectins	57	201	IPR036426	-
	Vra11g0091	782	SMART	serkin_6	484	760	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0091	782	Pfam	S-locus glycoprotein domain	238	306	IPR000858	GO:0048544

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g0091	Vra-Chr11	653455	656269	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0091	431	765	Receptor kinase-like Gene Family	AT5G45780	38.529	2.89e-66	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vra11g0091		Pkinase	6.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0091	-		-	gmx:102662509	1107.43