Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0088 ATGGCTGCTCAATTTCTTGGTCTCTCTGTTGCCATGCTTCTGTTTTTCAATGTTCCAAGCATCGCCATTTCAATTGAACTGGGATCCGGCATTGTGGCTGGAAGTGCCACCAGTTCATCTTGGCGATCATCCTCCGGGGAATATGCTTTTGGATTCTACCACCTTGTCAGTGGCCGCTATCTTGTTGGTATTTGGTTTGATAAAATTCTAGAAAAAACATTGGTTTGGTCTGCAAACCGTGACAATCCAGTCGAAATTGGATCATTCATCAATCTCACACGAAGTGGCCAATTTGTGATCCAACCTCTCAACGGGGCTTCGTTTTCCATCTACGAAGGAACAAACACTGCATCAGCAGAAATGAAGGATGACGGGAATTTCGTCTTGAAGAATTCATTTTCCAGCGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTGTTAGGCCAAACTTTGAATACCAGTCGGAAGCTCTATTCCAATGCCAATGGATCAGTGGACTATTCAACTGGACAATACAGTTTGGAGATCCAACAATCTGATGGCAACATTGTTCTTAAAGCTTATCGGTTCACGGATTCTGCCTACTGGTGGAGTGACACTGCCCAGAACACAGGTGTGAGAATTATTTTCGACAACACAACAGCTTTTCTTTACGCGGTCAATGCAACCAACCAAATTATATTTAACATGACTACTGAAGTAGTGGGTCCAATCGAAGATTACTACCATCGTGTGCTGGTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCACAAAGAGAATGGAAGTGAGTGGAGATCTGTGTGGCAGGCCGTAACAAAGCCTTGCACTGTGACTGCCCTTTGTGGGGTGTATGGTTTTTGCAACACATCTGGTTCTGACACCCAAACATACAGTTGTGGTTGCTTGCCAGGCTATACTCCTTTGGATCCAACAGCACCTTCCAAGGGGTGCTATCTCAGTGAGGTCAAGGACTTGTGTGCTGCAAATTCTTCTGCCTCAAACTTTGAGGTGGAAGTGAAAGAGATTCAAGATGCTGATATACCAAATTCCGGTTACTTTTTTCTTGATCTGAAAGTTTTGGATAGGATGGATTTGGAAAGCTGCAAGAAGGAACTGATGCATGATTGTCTATGTATGGTTGCTGTTTTAGATGGCAGTGCTTGCCATAAGAAAAAGTGGCCAATTATAAATGCCATAAGAATCATCCCTGACACTAGTAATCGTGTGATGCTGATTAAAGTTCCTCTGCTTGACAACAACAAGGACAACGAAAGGGATTCATCGTCTGTGGTTGTTTTGGTCGTGGCTCTCATTTCTTGCTCCCTACTTGCTGTCCTGTTTGCAGCCACTGCCATTTATCATCACCCCGTTTGTCAGCATCTCATGCACAAACAAGCACCACCAAAGCCAAAGACAAAGCCTATGGATATCAATCTAAGGGTATTTTCATTCCAACAACTGAGAGAAGCAACTAATGGATTCAAAGACAAACTTGGTCGAGGAGCCTATGGTACAGTGTTTGGTGGGGTTTTAAACTTGGAGGATCAACAGGTTGATGTTGCTGTCAAACAACTTGAGGAAGTAGACGACCGAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTCACTTATCATAGGAATCTAGTTGGTTTGGTGGGCTTTTGCAATGAGCAGAGTCATAGGCTTCTGGTTTATGAGAAAATGGAAAATGGGACACTGTCCAACTTTCTTTTTGGAGGAGATAGACCCAGCTGGGAGAGTAGAGTTAGGATTGTGCTTGAAATTGCAAGAGGCCTATTGTATCTGCATGAGGAGTGTGACCAACAAATCATCCATTGTGACATAAAGCCTCAGAATGTTCTGCTTGACTCTAGTTACACCGCAAAGATTTCAGATTTTGGGCTGGCAAAGCTGCTAATGAAAGATAAAACTCGAACAAACACAAACGCTAGAGGAACAATGGGATATATGGCACCAGAATGGCTAAAAAATGCTCCTGTTACTACAAAGGTGGATATCTACAGCTTTGGCGTGGTGTTGCTGGAAATCATATTTTGCAGAAGGCATATCGAGTTGCATGAAATTGAGAATGGAACAATGGGTGATGACATGATACTCGTGGACTGGGTTCTGTATCTGGTAATGGAAAGAAATTTAAGAGCCGCAGTGATTGATGATGTTGAAGTTGAAAGTGATTTCAGTAGGTTCGAAAGAATGGCAATGGTAGGATTATGGTGTATAAATCCCAATCCAAATCTTCGACCATCCATGAAAATTGTGGTACAAATGTTGGAAGGAAACGTAGAAGTGGGTGTTCCACCACTCCATTGA 2355 0.4276 MAAQFLGLSVAMLLFFNVPSIAISIELGSGIVAGSATSSSWRSSSGEYAFGFYHLVSGRYLVGIWFDKILEKTLVWSANRDNPVEIGSFINLTRSGQFVIQPLNGASFSIYEGTNTASAEMKDDGNFVLKNSFSSVIWQSFDSPTDTLLLGQTLNTSRKLYSNANGSVDYSTGQYSLEIQQSDGNIVLKAYRFTDSAYWWSDTAQNTGVRIIFDNTTAFLYAVNATNQIIFNMTTEVVGPIEDYYHRVLVDDKGNFQKLIYHKENGSEWRSVWQAVTKPCTVTALCGVYGFCNTSGSDTQTYSCGCLPGYTPLDPTAPSKGCYLSEVKDLCAANSSASNFEVEVKEIQDADIPNSGYFFLDLKVLDRMDLESCKKELMHDCLCMVAVLDGSACHKKKWPIINAIRIIPDTSNRVMLIKVPLLDNNKDNERDSSSVVVLVVALISCSLLAVLFAATAIYHHPVCQHLMHKQAPPKPKTKPMDINLRVFSFQQLREATNGFKDKLGRGAYGTVFGGVLNLEDQQVDVAVKQLEEVDDRGDKEFVTEVQVIALTYHRNLVGLVGFCNEQSHRLLVYEKMENGTLSNFLFGGDRPSWESRVRIVLEIARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTNTNARGTMGYMAPEWLKNAPVTTKVDIYSFGVVLLEIIFCRRHIELHEIENGTMGDDMILVDWVLYLVMERNLRAAVIDDVEVESDFSRFERMAMVGLWCINPNPNLRPSMKIVVQMLEGNVEVGVPPLH* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0088 784 Pfam S-locus glycoprotein domain 242 312 IPR000858 GO:0048544
Vra11g0088 784 SMART blect_4 28 144 IPR001480 -
Vra11g0088 784 ProSitePatterns Protein kinases ATP-binding region signature. 503 528 IPR017441 GO:0005524
Vra11g0088 784 Gene3D Phosphorylase Kinase; domain 1 471 574 - -
Vra11g0088 784 Gene3D - 35 143 IPR036426 -
Vra11g0088 784 SUPERFAMILY Protein kinase-like (PK-like) 476 773 IPR011009 -
Vra11g0088 784 PIRSF SRK 1 784 IPR024171 GO:0004674
Vra11g0088 784 Gene3D - 144 285 - -
Vra11g0088 784 CDD B_lectin 48 144 IPR001480 -
Vra11g0088 784 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 783 - -
Vra11g0088 784 Gene3D Transferase(Phosphotransferase) domain 1 576 778 - -
Vra11g0088 784 Pfam D-mannose binding lectin 73 159 IPR001480 -
Vra11g0088 784 ProSiteProfiles Bulb-type lectin domain profile. 28 142 IPR001480 -
Vra11g0088 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 203 IPR036426 -
Vra11g0088 784 Pfam Protein kinase domain 500 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0088 784 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 783 - -
Vra11g0088 784 SMART serkin_6 497 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0088 784 ProSiteProfiles Protein kinase domain profile. 497 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0088 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0088 Vra-Chr11 641153 643726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0088 399 783 Receptor kinase-like Gene Family AT1G53430 37.913 2.35e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra11g0088 Pkinase 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0088 - - pvu:PHAVU_002G046100g 1321.22