Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0084 ATGTCTTTAACTATCTTTTTGCCTTGCATTGTTGCACTTCTTTCACTTTCAAATCTCAATGGCTTACATGCCATAAAATCAAATACAAGCATCACTGCTGGATCCAATTCTACCTGGAAATCTTCCTCCAGTGATTTTGAATTTGGATTCTACGATCTTCCCAATGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCCCTGAGAGAACGCTGGTATGGTACCTTGCTCCTCCTGTGGAACCGAATTCCCAAATCCAATTCACTTCTGCAGGACAGCTTGTTGTAGTACACCCAAACGGGACTACTGCTCAGACCATATACAGCGGAGGAAACGGCGGGGCGGCAACATCTGCCACCATGCAAGACGATGGCAATTTTGTGATGAAGAACTCCAACTTAAGACCTGTCTGGGAGAGTTTCAACTTTCCAGCCGACACAATCTTGCCAGGCCAAACCTTGCAGACTAATCATAGCCTCTATTCCAAGGGGAGAGGACCTTCAAACTACTCATTGGGAAATTTCATGCTACAAATGCAAGGTGATGGCAACTTGTTGCTCAAAGCTCACCAATGGGCTGACCCTGCATACTGGTACACTTCAACTACGACCCCAAATGTAAATTTGCTGTTTAATGCTACCACTGCTCTCATGTACCTTGTCGGCGGCGGCACCGGGAACATCTACTCTATAACCAACACCACTCCAACCCCGGTGGAGGATTATTATCATCGTGCTGCAATAGATGAGAATGGGAATTTCCAGCAATATGCATATCGTAAAAGGAACGGGAGCGGATGGAGCAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGTTGTCTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAGTCAAGTGTCAGTGTCTTCCAGGTTATATCTCGTTGGATGATCAAGATGTTTCAAAAGGGTGTCGCCCACCAGCTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCCATTTTGATACTCATCTTATTAGGTTGGCTGGTGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAATATCGGTGCTGCAACTTATAGCCAATCCACCTCCACATGTGTCAAGAAGAGATTGCCCTTGCTGAATGCTAGAAATAGCACTTCTTCGAAGGGACTGAAAGCACTGCTTAAAGTTGCTGACAGGGTTGAGTCTGGGACACCTAAAGTTTCCAAGAAGAAGAGTTTTAATGTAAGAGTCCTTTTGAAGGCTCTTCTTGCTGTTACTGCCACTCTTGCCTGTTTCTTGGGTTCCCTTGCTGTTTACTATCATCCTTTCACTCGAAGAATAATAAGAAAAAAGAAGCATCTGAATGCAACAACTATTGGAATCAACTTCAGAGAATTCACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTCACTAGGATTCTTGGAAGGGGAGCTTCAGGCAAAGTCTATCGTGGTGCTTTAATAATAGATGGTGCAGAGATTGGTATTGCAGTAAAGAAACTAGAAAAGAAAATAGAGAAAAGTGAAAGAGAATTCATGACTGAGCTCAAAATTATTGGTCGTACGCATCACAGAAATTTGGTGAGGCTTTTGGGTTTTTGCATTGATAATAGCCATCGAATTATAGTATATGAGTTGATGCCAAATGGAGCACTGTCCAGTTTTCTGTTCGGAGAGGGAGAAAGACCTCAATGGGGTCAGAGGATTGAAATGGCTCTTGGGGTCGCAAGGGGCTTGCTATACTTGCACGAAGAGTGCAACACCCAAATCATACATTGTGACATAAAGCCCGAAAATGTGTTACTAGATGCCAATTACATAGCAAAGATTGCAGATTTTGGGCTGTCTAAACTTTTGAACAAAGACCAAACTAGAACAAACACTAATTTAAGAGGGACAATGGGATACATGGCACCTGAATGGCTAAGGAGTGCACCAATAACTGCTAAAGTTGACATATACAGTTTTGGGGTTATGCTGTTGGAGATGATTTGCTGCAGGAGGCACATTGAGTGTTGTGAGGATGGAAAAAACAGTGAAGATGATGATTTGGTTCTTTCAAATTGGGTTTTAAGGTGTGTGGTGTGTAGGCAACTAGAGGTAGTGGTGAGACATGACACAGAAGTGCTGAATGATTTCAAGAAGTTTGAGGAAATGGCCTTGGTTGGACTATGGTGCGTTCATCCAAATCCCGCTTTGAGGCCTTCGATGAAGCATGTGATGCAAATGCTAGATGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTTACGATATGATGATGGCAGATCAGGGCTTATAG 2355 0.4357 MSLTIFLPCIVALLSLSNLNGLHAIKSNTSITAGSNSTWKSSSSDFEFGFYDLPNGLFLVGIWFGRIPERTLVWYLAPPVEPNSQIQFTSAGQLVVVHPNGTTAQTIYSGGNGGAATSATMQDDGNFVMKNSNLRPVWESFNFPADTILPGQTLQTNHSLYSKGRGPSNYSLGNFMLQMQGDGNLLLKAHQWADPAYWYTSTTTPNVNLLFNATTALMYLVGGGTGNIYSITNTTPTPVEDYYHRAAIDENGNFQQYAYRKRNGSGWSRVWRAVEDPCRVNVVCGVYGLCTSPDNESVKCQCLPGYISLDDQDVSKGCRPPAVINYCAENNFKLQVFDDTDFHFDTHLIRLAGVDFESCKKDVIDDCNIGAATYSQSTSTCVKKRLPLLNARNSTSSKGLKALLKVADRVESGTPKVSKKKSFNVRVLLKALLAVTATLACFLGSLAVYYHPFTRRIIRKKKHLNATTIGINFREFTFQELHEATDGFTRILGRGASGKVYRGALIIDGAEIGIAVKKLEKKIEKSEREFMTELKIIGRTHHRNLVRLLGFCIDNSHRIIVYELMPNGALSSFLFGEGERPQWGQRIEMALGVARGLLYLHEECNTQIIHCDIKPENVLLDANYIAKIADFGLSKLLNKDQTRTNTNLRGTMGYMAPEWLRSAPITAKVDIYSFGVMLLEMICCRRHIECCEDGKNSEDDDLVLSNWVLRCVVCRQLEVVVRHDTEVLNDFKKFEEMALVGLWCVHPNPALRPSMKHVMQMLDGTVEVGVPPLVYDMMMADQGL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0084 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 202 IPR036426 -
Vra11g0084 784 SMART blect_4 30 144 IPR001480 -
Vra11g0084 784 Pfam S-locus glycoprotein domain 240 306 IPR000858 GO:0048544
Vra11g0084 784 Gene3D - 144 281 - -
Vra11g0084 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vra11g0084 784 Pfam D-mannose binding lectin 79 159 IPR001480 -
Vra11g0084 784 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 774 - -
Vra11g0084 784 ProSiteProfiles Protein kinase domain profile. 486 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0084 784 Gene3D Phosphorylase Kinase; domain 1 458 564 - -
Vra11g0084 784 Gene3D Transferase(Phosphotransferase) domain 1 565 772 - -
Vra11g0084 784 SUPERFAMILY Protein kinase-like (PK-like) 473 772 IPR011009 -
Vra11g0084 784 Gene3D - 22 143 IPR036426 -
Vra11g0084 784 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 774 - -
Vra11g0084 784 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Vra11g0084 784 Coils Coil 516 536 - -
Vra11g0084 784 PIRSF SRK 1 783 IPR024171 GO:0004674
Vra11g0084 784 ProSitePatterns Protein kinases ATP-binding region signature. 492 518 IPR017441 GO:0005524
Vra11g0084 784 Pfam Protein kinase domain 490 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0084 784 SMART serkin_6 486 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0084 Vra-Chr11 617338 619755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0084 415 782 Receptor kinase-like Gene Family AT2G43700 33.957 6.03e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra11g0084 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0084 - - gmx:102662509 1225.69