Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0078 ATGGGTTCTGAAACTTTTATTGAAGTGATATTAGCAATCCTTTTACCTCCCGTTGGTGTTTTCCTCCGTTATGGCTGTGGTATTGAATTCTGGATAGATTTGCTGCTGACGCTGCTTGGATACATCCCTGGGGTCATATATGCCATATATGTACTGGTTGCATGA 165 0.4182 MGSETFIEVILAILLPPVGVFLRYGCGIEFWIDLLLTLLGYIPGVIYAIYVLVA* 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0078 54 PANTHER BNAA04G22250D PROTEIN 1 53 - -
Vra11g0078 54 ProSitePatterns Uncharacterized protein family UPF0057 signature. 10 25 IPR000612 GO:0016021
Vra11g0078 54 Pfam Proteolipid membrane potential modulator 6 53 IPR000612 GO:0016021
Vra11g0078 54 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 1 53 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0078 Vra-Chr11 569345 569983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0078 1 54 RCI2 Gene Family AT2G38905 87.037 1.49e-28 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0078 - - nnu:104594760 108.612