Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0076 ATGGACCTTCACAACCGACCAGATCACTGTTTTCCGGAGAAGAAAGGTCAGAAGAGGAAGTTGGAGGAGGATTTCGAAGATGACCGACAGATCTCCGCCCCTCCCACCGGCCACGCGAGAGACGCCCTCCTCTCCGACGTCAAGGAACAGGTCATCGTTCTTGATTCAACCTTCTCATGGAAGGAATCCGATCGTGCTGCCGCCAAGCGCGCCACGCACGCTCTCGCGGATCTCGCCAAAAACGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCAATTCCTGCTTTGGTTAAACATCTTCAAGCGCCTCCTCTGGCTGGAAGCGACCGGTTGCAGAGGCCAATGCCGTTTGAGCACGAGGTTGAGAAGGGAAGTGCTTTCGCGCTTGGACTTCTCGCAGTCAAGCCGGAGCACCAGCAGCTCATCGTTGACAGCGGTGCTTTGAAACATCTCGTTGATCTTTTAAAGAGACATGAAAATGGCTTAACATCTCGTGCCATTAATAGTCTAATTCGTAGGGCTGCAGACGCGATTACTAATCTTGCGCACGAGAACAGCAGTATTAAGACTCGTGTCAGGATGGAAGGTGGGATTCCACCGCTCGTTCATTTACTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTTGCTTTCAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTTCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCTCCTAACATAAAAAAAGAAGTTATTCTTGCTGGAGCCCTACAACCGGTCATCGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACAGCAAGGTTCACATTGTTCAGAGGGGTGCTGTCGGACCTCTGATAGACATGCTTCAGTCTCCTGATGTTCAGCTAAAAGAAATGTCTGCTTTTGCGTTGGGGAGACTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATTCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTACGGCCTTGCAGATAATGAGGATAATGTGGCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAGACATTAAAAAGATTAGAAGAAAAGATTCATGGGCGAGTGTTGAACCATTTGTTATATCTCATGCGAGTCTCAGAGAAGGCTTTTCAAAGAAGAGTTGCTTTGGCTCTTGCTCACCTTTGTTCTGCAGATGACCAGAGAAAAATATTTATTGATCACCATGGTTTGGAATTGCTTATGGGGCTTCTTGGCTCGTATTATAATCCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCACGACTCTGTCTCCTGTGGATGCTGCACCCCCATCTCCCACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTCTAGTTGAAGGCAAACGATTTTATGCTCACAGAATTTGTCTGCTTGCATCTTCAGACGCATTTCGTGCTATGTTTGATGGAGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATACACGGGATCAGTTGAGATCACGCTTGACATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGTGAGTACACGATTGCGCAGGATATATCACTTGAGAGCGTATCAAGTATGTATGAACTTTCTGAAGCATTTAATGCTATATCGTTGAGGCACACCTGCATCCTTTTTATCTTGGAACACTTTGATAAATTGAGTGTAAAGCCAGGACACTCCCATCTGATTCAGCGTATAATACCTGAGATCCAGAATTACTTTGTTAAGGCCCTTACAAAGGCCAATTCCAACAATCAACCGTAG 2124 0.4557 MDLHNRPDHCFPEKKGQKRKLEEDFEDDRQISAPPTGHARDALLSDVKEQVIVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAGSDRLQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHENGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDSKVHIVQRGAVGPLIDMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHHGLELLMGLLGSYYNPKQQLDGAVALCKLANKATTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLESVSSMYELSEAFNAISLRHTCILFILEHFDKLSVKPGHSHLIQRIIPEIQNYFVKALTKANSNNQP* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0076 707 Gene3D - 273 519 IPR011989 -
Vra11g0076 707 SUPERFAMILY POZ domain 533 635 IPR011333 -
Vra11g0076 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Vra11g0076 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Vra11g0076 707 Gene3D - 41 168 IPR011989 -
Vra11g0076 707 Pfam BTB/POZ domain 534 636 IPR000210 GO:0005515
Vra11g0076 707 MobiDBLite consensus disorder prediction 1 38 - -
Vra11g0076 707 CDD BTB_POZ_ARIA_plant 528 643 - -
Vra11g0076 707 SMART BTB_4 541 638 IPR000210 GO:0005515
Vra11g0076 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Vra11g0076 707 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Vra11g0076 707 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Vra11g0076 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Vra11g0076 707 SUPERFAMILY ARM repeat 438 510 IPR016024 -
Vra11g0076 707 SMART arm_5 353 393 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 270 310 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 81 135 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 136 184 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 228 268 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 468 509 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 186 226 IPR000225 GO:0005515
Vra11g0076 707 SMART arm_5 312 352 IPR000225 GO:0005515
Vra11g0076 707 Gene3D Potassium Channel Kv1.1; Chain A 521 670 IPR011333 -
Vra11g0076 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 13 704 IPR044282 -
Vra11g0076 707 ProSiteProfiles BTB domain profile. 541 608 IPR000210 GO:0005515
Vra11g0076 707 Gene3D - 169 272 IPR011989 -
Vra11g0076 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Vra11g0076 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 13 704 - -
Vra11g0076 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Vra11g0076 707 MobiDBLite consensus disorder prediction 1 34 - -
Vra11g0076 707 SUPERFAMILY ARM repeat 62 411 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0076 Vra-Chr11 554521 562225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0076 296 410 U-box Gene Family AT3G46510 28.696 4.44e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vra11g0076 BTB 2.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0076 - - pvu:PHAVU_002G047400g 1330.47