Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0068 ATGTTTCACACAAACATGTTTGATTCTCACCCTAACATGCTTGATATGTCACCCCACAAAACTACTTTCTCTGAGACTGACCTGGGAAAGCCCAGAGATGATGAATATGAGACCAAGTCTGGCACTGACATGGACGCTCCTTCCGGCGACGATCAAGACCCCAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAGATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCTGATGACAAGCAAAGGAAAGAGCTAAGCCGGGATTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAGCATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAACGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCCCTTGGAGAAATGTCCTTCGACGAACAGCACTTGAGGATTGAGAACGCTCGGTTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAGTACGTTGGAAAGCCTGTGACGTCTTCGTACTCCAACCTTTCATCACTCAACAACAATCACATGCCTGTCGGTAACTATGGAGCACAGTCAGGCACGGTAGGAGAAATGTACGGTGGAAGTGACCTTTTTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTCACAAGACTAGCTCAGGCCGGAGACTCTTTATGGGTCCCCGGGAACCACCACTCTGAGATTCTGAATGAAGAAGACTATTTGAGGACTTTCCCTAATAGGGGTTTAGGTCCCAAACCTCTGGGCTTGAGATCTGAAGCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTGATTGATATCCTTATGGATGTGAACCAATGGTCAACTATGTTTTGCGGTATTGTCTCAAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCCGAGTTCCAAGTCCCTTCACCGCTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTGGATGTTTCTTTGGATAATCTGCGACCCAGTACGATGTCAAGAAGCCAAAGAAGACCCTCTGGATGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTCACATGGATCGAACATGTAGAAGTGGATGACAGGGCGGTTCATAGCATATATAAAACCCTAGTTAATTCCGGTCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGAATCTCTGTGTGATAACCAGTGCCGAGGGAAGAAAAAGTATGCTGAAGCTGGCAGAAAGAATGGTCATTAGCTATTGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACACTATCCGCAACTGGATGTGATGACGTGAGGGTCATGACTAGAAAGAGCACTGATGAACCTGGCAGACCACCCGGCATAGTGCTGAGTGCAGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTACGCGATGAAAACTCAAGAAATGAGTGGGACATTCTTTCTAATGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGCCGTGATCCTGGCAACTGTGTCTCCCTACTTCGAGTCAACAGTTCAAATTCAAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTCTACTGGGTCATATGTAGTTTATGCTCCTGTGGATATTGTAGCTATGAATGTAGTATTGGGTGGAGGGGATCCAGATTATGTTGCCCTGCTTCCCTCGGGCTTTGCTATTCTTCCTGATGGGCCTGGAATGAATGGTGGGTCAATACTTGAAGTTGGATCAGGAGGTTCTCTACTCACAGTTGCCTTTCAGATCTTGGTTGATTCAGCCCCAACAGCAAAACTATCTTTGGGTTCAGTTGCTACTGTTAACAGCCTAATTAAGTGCACAGTTGAAAGGATCAAGGTGGCAGTGTGTTATAACAATTAA 2178 0.4697 MFHTNMFDSHPNMLDMSPHKTTFSETDLGKPRDDEYETKSGTDMDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHMPVGNYGAQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGNHHSEILNEEDYLRTFPNRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTMSRSQRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGNLCVITSAEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSSNSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGMNGGSILEVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVCYNN* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0068 725 MobiDBLite consensus disorder prediction 1 67 - -
Vra11g0068 725 Gene3D - 312 468 IPR023393 -
Vra11g0068 725 SMART START_1 247 467 IPR002913 GO:0008289
Vra11g0068 725 Coils Coil 111 146 - -
Vra11g0068 725 Pfam START domain 248 467 IPR002913 GO:0008289
Vra11g0068 725 SUPERFAMILY Bet v1-like 239 469 - -
Vra11g0068 725 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Vra11g0068 725 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Vra11g0068 725 SUPERFAMILY Bet v1-like 488 717 - -
Vra11g0068 725 SUPERFAMILY Homeodomain-like 44 117 IPR009057 -
Vra11g0068 725 SMART HOX_1 59 121 IPR001356 GO:0003677
Vra11g0068 725 CDD homeodomain 60 118 IPR001356 GO:0003677
Vra11g0068 725 Gene3D - 47 133 - -
Vra11g0068 725 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Vra11g0068 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 16 723 - -
Vra11g0068 725 CDD START_ArGLABRA2_like 242 466 - -
Vra11g0068 725 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Vra11g0068 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 723 IPR042160 -
Vra11g0068 725 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0068 Vra-Chr11 488647 496240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0068 1 721 Homeobox Transcription Factor Family AT4G04890 77.328 0.0 1162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra11g0068 START 6.3e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0068 K09338 - gmx:100815499 1334.7