Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0066 ATGGCAACACACCAATCTCTGTTAGACAACCCTAGAAAATCCGTTTCCAAAACTACATGCTTAATCTTCTCTCTAGCTGTTGTGCTAACTTCATCAGCTCTTATTGCTTCCTATCTCACAAAACCTTCCCCCTTATTCAACCATGGCATCTCTCGCCGTGTTTGTGATCATGCAATTCATCCTTCAGCCTGCTTGGCACATGTCATGGAAGTCGTACAAGATCCGAAGTTCGGTGCCACACAAAACCACAGATTCGGATTGCTGCAATCCTTTTTAATGAAATCCACGTCACACATTGAGAGAGTGATAGGGGCAGCCAACGCTATGAGGGTGAGGATGAACAGTCCAGGAGAAGAAGCCGCCATGCAGGATTGCGTGGAGCTGATGGAGTTGTCCTTGGACAGAGTTTGGGACTCAAAGGCCAGCCTAACCAAAGGGACGACTGATTCGGCGCAAGATGCCCACACTTGGCTAAGCAGCGTGCTCACTAATCATGTAACTTGCTTGGACGGACTGAAGGGGCGAGCTCGACGGCTGATGGAGGCAGAGGTTCAGGACTTGATATCGAGAGCAAGAAGCTCTTTAGCCATGTTCGTTGCTGTTTTGCCTCCAAATCCAGAGGTTGAAGTCGTGTCGCTAAATGGGAAGTTTCCGTCATGGGTGAGAAGCAAGGATCGGAGGCTGTTAGAGTCTTCAGCCGGAGAGATCAAGGCGAACGTTGTGGTGGCTCAGGACGGGACTGGTGACTTTTTTACTGTTGCTGAAGCTTTGGCCACGGTACCCAATAAAAGCAAGAAGAGGTATATTATTCATGTGAAGAACGGAACATATTTTGAGAAACTTGAAATTGGTAAGAAACAGAAGAACGTCATGCTGGTGGGTGACAGCATGGATTTAACTATAATCACCGGAAACGTGAGCGTCACCAAAGAAACGGGCACCTTTCACACTGCTACTGTTGCGGCGGTTGGGGATGGGTTCATAGCCCAAGATATTTGGTTTAAAAATTTTGCAGGCGCAGAAAAGCACCAGGCAGTTGCACTTCGCGTGGGCGCTGATCAATCCGTGATAAATCGTTGCCGCGTGGACGCATATCAAGACACGCTCTACGTCCATTCCAACAGACAGTTCTACCGCGACTCCTACGTTAAGGGCACCGTTGACTTCATTTTTGGAAACGCAGCTGCCGTCTTCCAGAACTGTACGCTGGAGGCCCAAAAGCCCATGAAAGGTCAGAAAAACATGGTGACAGCCCAATCACGAACAGATCCAAACCAAAACACAGGAATTTCAATTCAACAGTGTAACATCTCCCCCAGCGAGGATCTTAGGCCCGTCATAGGGTCTTTCAAAACATATTTGGGCCGCCCGTGGCAGAACTTCTCGAGGACTGTTGTTATGCAATCCTTTCTGGACGAGCATATTGACCCAGAGGGATGGTCGGAATGGGATGAGAAACATAAAAGCTATTTGGAAACCCTGTATTATGGAGAGTACATGAACAGAGGACCTGGTGCCGGTACCGGTGGAAGAGTGAATTGGACCGGTTACCACATCATCACAAGTGCGGCCGTAGCCAACCAGTTCACGGTGAAAAACCTCATCCAAGGCGATGTTTGGTTGAAGAACACTGGGGTCAACTACATTGAAGGTCTATAA 1659 0.484 MATHQSLLDNPRKSVSKTTCLIFSLAVVLTSSALIASYLTKPSPLFNHGISRRVCDHAIHPSACLAHVMEVVQDPKFGATQNHRFGLLQSFLMKSTSHIERVIGAANAMRVRMNSPGEEAAMQDCVELMELSLDRVWDSKASLTKGTTDSAQDAHTWLSSVLTNHVTCLDGLKGRARRLMEAEVQDLISRARSSLAMFVAVLPPNPEVEVVSLNGKFPSWVRSKDRRLLESSAGEIKANVVVAQDGTGDFFTVAEALATVPNKSKKRYIIHVKNGTYFEKLEIGKKQKNVMLVGDSMDLTIITGNVSVTKETGTFHTATVAAVGDGFIAQDIWFKNFAGAEKHQAVALRVGADQSVINRCRVDAYQDTLYVHSNRQFYRDSYVKGTVDFIFGNAAAVFQNCTLEAQKPMKGQKNMVTAQSRTDPNQNTGISIQQCNISPSEDLRPVIGSFKTYLGRPWQNFSRTVVMQSFLDEHIDPEGWSEWDEKHKSYLETLYYGEYMNRGPGAGTGGRVNWTGYHIITSAAVANQFTVKNLIQGDVWLKNTGVNYIEGL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0066 552 PANTHER PECTINESTERASE 14 551 - -
Vra11g0066 552 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vra11g0066 552 Pfam Plant invertase/pectin methylesterase inhibitor 52 188 IPR006501 GO:0004857
Vra11g0066 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 184 IPR006501 GO:0004857
Vra11g0066 552 CDD PMEI-like_4 57 201 - -
Vra11g0066 552 Gene3D - 233 552 IPR012334 -
Vra11g0066 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Vra11g0066 552 Pfam Pectinesterase 239 538 IPR000070 GO:0030599|GO:0042545
Vra11g0066 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Vra11g0066 552 PANTHER PECTINESTERASE 14 551 - -
Vra11g0066 552 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Vra11g0066 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0066 Vra-Chr11 483058 485197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0066 3 552 Carbohydrate Esterase AT1G11580 50.357 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0066 K01051 - gmx:100815836 773.467