Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0065 ATGGCTATCCAACAATCTCTGCTAGACAAGCCTAGAAATTCTATTTCCAAAACAATCTGTTTAGTCTTTTCTGTAGCTGCTGTCATATGTTCATCAGCCTTTGTTGGTTCCTATCTCATCAAATCCAGTTCCTTCCTTAACCAGTCCCCTCTTCAACATCTCTGTCGCCATGCACTTGATAATCCATCATGCTTAGCACATGTCTCGGAAGTGCTTCAAGATCCCATCTTGACCACCACAAAAGACTACAACTTGAATTTGTTCCACTCTTTCTTAATGAAATCCACCTCTCACATTCAGAGAGTTATGAACACAGTCAGTTCCATCAAACTTAGGATTAACAATCCCCGAGAGGAAGCAGCTTTGAACGACTGTGTGGAGCTGATGGACTTATCCATCAACAGAGTTTGGGACTCGATCGTGACTCTAACGAAAGAAACCGATGAGTCACAGCAAGATGCACACACATGGCTAAGTAGCGTGCTCACTAACCATGCAACTTGTTTGGATGGGTTAGAGGGGACAGCTCGAGCCCTTATGAAGGATGAACTCGAGGACTTGAAATCCAGAGCGAAAACCACTCTGGCCATGTTCGTTGCTGTTGTACCTCAGAGGGTTGAACCAATCATGGATGAACCACTGAACGGGGAGTTTCCCTCATGGTTGAGCAGCAAGGATAGGAAGCTTTTGGAGTCCAGTGCTTTGAAGATCAATGCGAACGTTGTGGTGGCCAAGGATGGGAGTGGCAAGTTTAAGAGTGTAGCTCAGGCTGTGGCATCTGCACCTGATAACGGGAAGACAAGGTATGTTATTTACGTGAAAAAAGGAACATATAAAGAGAATGTTGAAATCAGTAGTAAGAAGACGAACGTGATGCTGGTTGGAGATGGTAAGGATGTAACTATAATTACTGGGAGCTTGAATTATATTGACGGAACCACCACGTTTAAGTCCGCCACTGTAGCTGCTGTGGGGGATGGATTTATAGGTCAAGACATATGGTTCCAGAACACTGCAGGTCCACAGAAGCACCAAGCAGTGGCTCTTCGAGTAGGTGCGGATCGATCCGTCATAAACCGATGCCGCATTGATGCCTTCCAAGACACTCTGTATGCCCACTCTAACAGGCAGTTTTACAGAGACTCCTATATCACTGGCACCATTGATTTCATATTTGGAAATGCAGCGGTTGTGTTTCAAAAGTGCAACATTGCGGCCCGAAAGCCCATGAGTAACCAGAAGAACATGGTGACGGCCCAGGGACGAGAAGATCCAAACCAGAACACAGGAACTTCGATTCAACAATGTAATATAATACCAAGTTCGGATCTGAAGCCTGTGGTAGGGTCCATCAAGACTTTCCTAGGGCGGCCATGGAAGAAGTACTCGAGAACCGTTGTGATGCAGTCCACAATAGAGAGCCATGTTGACCCAACAGGATGGGCAGAGTGGGATGCCCAGAGTAAGGACTTTTTGAACACGTTGTATTATGGAGAGTACATGAACAAAGGAGCTGGTGCTGGTACCGGCAAGAGGGTGAAGTGGCCTGGTTACCATGTCATCAAAAGTGCAGCAGAAGCCAGCAAGTTCACGGTAACACAGCTTATTCAAGGAAATGTTTGGCTGAAGAACACCGGGGTCAACTACATCGAAGGCCTCTAA 1662 0.4615 MAIQQSLLDKPRNSISKTICLVFSVAAVICSSAFVGSYLIKSSSFLNQSPLQHLCRHALDNPSCLAHVSEVLQDPILTTTKDYNLNLFHSFLMKSTSHIQRVMNTVSSIKLRINNPREEAALNDCVELMDLSINRVWDSIVTLTKETDESQQDAHTWLSSVLTNHATCLDGLEGTARALMKDELEDLKSRAKTTLAMFVAVVPQRVEPIMDEPLNGEFPSWLSSKDRKLLESSALKINANVVVAKDGSGKFKSVAQAVASAPDNGKTRYVIYVKKGTYKENVEISSKKTNVMLVGDGKDVTIITGSLNYIDGTTTFKSATVAAVGDGFIGQDIWFQNTAGPQKHQAVALRVGADRSVINRCRIDAFQDTLYAHSNRQFYRDSYITGTIDFIFGNAAVVFQKCNIAARKPMSNQKNMVTAQGREDPNQNTGTSIQQCNIIPSSDLKPVVGSIKTFLGRPWKKYSRTVVMQSTIESHVDPTGWAEWDAQSKDFLNTLYYGEYMNKGAGAGTGKRVKWPGYHVIKSAAEASKFTVTQLIQGNVWLKNTGVNYIEGL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0065 553 Pfam Plant invertase/pectin methylesterase inhibitor 51 196 IPR006501 GO:0004857
Vra11g0065 553 SUPERFAMILY Pectin lyase-like 237 552 IPR011050 -
Vra11g0065 553 Gene3D - 234 553 IPR012334 -
Vra11g0065 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vra11g0065 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 197 IPR006501 GO:0004857
Vra11g0065 553 CDD PMEI-like_4 63 201 - -
Vra11g0065 553 PANTHER PECTINESTERASE 26 551 - -
Vra11g0065 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Vra11g0065 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 198 IPR035513 -
Vra11g0065 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 201 IPR035513 -
Vra11g0065 553 PANTHER PECTINESTERASE 26 551 - -
Vra11g0065 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Vra11g0065 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0065 Vra-Chr11 473962 475896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0065 5 553 Carbohydrate Esterase AT1G11580 57.424 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0065 K01051 - gmx:100815836 951.429