Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0064 ATGGCTACCCAACAATCTCTGTTAGAGAAGCCTAAAAAGCCCGTTTCCAAAACTATCTGCTTACTCCTTTCTGTAATTGCAGTTCTCAGTTCATCAGCTTTTGTTGCTTCTTATATCTTCAAACCATCCTCAGTCTTCAACGATTCCTCCCTTAACCATGTCTGTGATCACGCACTTGATACTACATCCTGCTTAGCACATATCTCTGAACTAACCCAAACTCACAGGTTCAACACAGCAAAACCCCACAAATTCGATTTGCTCAAATCGTTCCTGATAAAACACACCTCAGATATTGAGAAAGCCATGGGCGAAACCAATGCTATCAGACTCAGGGTCAACAATCCGAGAGAGGAAGCAGCTTTGAAGGATTGTGTGGATCTGATGGAGTTGTCCTTGGACAGAGTTTGGAACTCCATGTTAGCACTGACAAAACAAACCACTGAGTCGCATCAAGATGCACACACGTGGCTAAGTAGCGTGCTAACTAATCATGCAACTTGCTTGGACGGATTAGAGGGTGCGGCTCGCAGTGTTATGGAGGATGAACTTGAGGACTTGAAATCTAGGTCAAGAACCGCTCTGGCCATTCTTGTTGAGACGGTTTTGCCACCGAAGATAATTGACGAACCCCTTAATGGGGACTTTCCCTCATGGGTTAGCAGCAGGGATCGGAGGCTGTTGGAGAGTGGGGTTGGGGACGTCAAGGCTAATGTCGTGGTGGCTCAGGATGGGAGTGGAAAGTTTAAGACTGTCACTGAGGCTGTTGCATCAGCACCGGACAATGGCAAGACAAGGTACGTTATTTATGTGAAAAAGGGAACATATAAAGAACATGTTGAAATTGGTAAGAAGAAGAAAAACATCATGCTCGTCGGTGACGGTATGGATGCAACTATAATCACCGGAAGCTTGAATTTCATCGACGGAACTACAACCTTTAACAGTGCCACCGTTGCTGCTGTGGGTGATGGATTTATAGGTCAAGACATATGGTTTCAGAACACAGCGGGAGCGGCGAAACACCAAGCTGTGGCTCTTCGCGTTGGCGCCGACCAATCTGTGATAAACCGTTGTCGCATAGATGCCTTTCAGGACACTCTCTACGCACACTCCAACAGGCAGTTTTACAGAGACTCTGTCATCACTGGCACTATTGACTTCATTTTTGGAAATGCTGCTGTTGTTTTCCAAAAGTGCAACCTGGTGGCCCGAAAGCCGATGAGTAACCAAAAGAATATGGTGACGGCTCAAGGAAGAGAAGATCCAAATCAAAATACAGGAACTTCAATTCAACAATGTAACCTAACACCGAGTTCAGATCTTAAGGCTGTTGTGGGTTCCATCAAAACTTATCTGGGTCGACCTTGGAAGAAGTATTCCAGGACTGTTATCATGCAGTCGTCGATAGACAGCCATATTGACCCAACAGGATGGGCAGAATGGGATGCCCAGAGTAAGGACTTTTTGCAAACGTTGTATTATGGAGAGTACATGAACAGTGGAGCAGGTGCTGGAACTAGCAAGAGAGTGAATTGGCCTGGTTACCATATCATCACAAGCGCAGCAGAAGCCAGCAAGTTCACAGTAACACAACTCATCCAAGGAAATGTTTGGTTGAAGAACACTGGTGTCAACTTCATTGAAGGTCTCTAA 1656 0.4559 MATQQSLLEKPKKPVSKTICLLLSVIAVLSSSAFVASYIFKPSSVFNDSSLNHVCDHALDTTSCLAHISELTQTHRFNTAKPHKFDLLKSFLIKHTSDIEKAMGETNAIRLRVNNPREEAALKDCVDLMELSLDRVWNSMLALTKQTTESHQDAHTWLSSVLTNHATCLDGLEGAARSVMEDELEDLKSRSRTALAILVETVLPPKIIDEPLNGDFPSWVSSRDRRLLESGVGDVKANVVVAQDGSGKFKTVTEAVASAPDNGKTRYVIYVKKGTYKEHVEIGKKKKNIMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIGQDIWFQNTAGAAKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKAVVGSIKTYLGRPWKKYSRTVIMQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAGTSKRVNWPGYHIITSAAEASKFTVTQLIQGNVWLKNTGVNFIEGL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0064 551 SUPERFAMILY Pectin lyase-like 236 550 IPR011050 -
Vra11g0064 551 CDD PMEI-like_4 57 199 - -
Vra11g0064 551 PANTHER PECTINESTERASE 22 549 - -
Vra11g0064 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 197 IPR006501 GO:0004857
Vra11g0064 551 Pfam Pectinesterase 238 537 IPR000070 GO:0030599|GO:0042545
Vra11g0064 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 197 IPR035513 -
Vra11g0064 551 Gene3D - 232 551 IPR012334 -
Vra11g0064 551 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Vra11g0064 551 Pfam Plant invertase/pectin methylesterase inhibitor 50 197 IPR006501 GO:0004857
Vra11g0064 551 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Vra11g0064 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 200 IPR035513 -
Vra11g0064 551 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vra11g0064 551 PANTHER PECTINESTERASE 22 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0064 Vra-Chr11 466620 468586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0064 3 551 Carbohydrate Esterase AT1G11580 57.679 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0064 K01051 - gmx:100815836 894.419