Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0063 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATAACTCTTGAGGTGGAGAGTTCCGACACCATCGACAACGTAAAGTCCAAAATTCAGGACAAAGAAGGGATTCCACCGGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCAACCCTGCATCTGGTCCTCCGTCTACGTGGAGGAATGCAGATATTCGTTAAGACCCTTACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTCAGACACCATTGACAATGTGAAGGCTAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAACATCCAGAAGGAGTCAACCCTTCACCTTGTACTCCGACTCAGGGGTGGGATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACCATCACTCTGGAGGTTGAGAGTTCTGACACTATCGACAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATTCCACCGGACCAGCAGAGACTGATCTTCGCAGGGAAGCAGTTGGAAGATGGGAGGACCCTTGCTGACTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTTCGTGGTGGTTTTTAA 690 0.5 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0063 229 PRINTS Ubiquitin signature 87 107 IPR019956 -
Vra11g0063 229 PRINTS Ubiquitin signature 108 128 IPR019956 -
Vra11g0063 229 PRINTS Ubiquitin signature 129 150 IPR019956 -
Vra11g0063 229 PANTHER - 1 154 - -
Vra11g0063 229 PANTHER - 64 228 - -
Vra11g0063 229 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vra11g0063 229 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vra11g0063 229 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vra11g0063 229 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vra11g0063 229 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vra11g0063 229 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vra11g0063 229 CDD Ubl_ubiquitin 77 152 - -
Vra11g0063 229 CDD Ubl_ubiquitin 1 76 - -
Vra11g0063 229 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vra11g0063 229 PANTHER UBIQUITIN 64 228 - -
Vra11g0063 229 PANTHER UBIQUITIN 1 154 - -
Vra11g0063 229 CDD Ubl_ubiquitin 153 228 - -
Vra11g0063 229 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vra11g0063 229 Gene3D - 153 229 - -
Vra11g0063 229 Gene3D - 77 152 - -
Vra11g0063 229 Gene3D - 1 76 - -
Vra11g0063 229 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vra11g0063 229 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vra11g0063 229 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Vra11g0063 229 SMART ubq_7 153 224 IPR000626 GO:0005515
Vra11g0063 229 SMART ubq_7 1 72 IPR000626 GO:0005515
Vra11g0063 229 SMART ubq_7 77 148 IPR000626 GO:0005515
Vra11g0063 229 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0063 Vra-Chr11 461122 462508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0063 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 5.50e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0063 - K08770 csv:101210864 443.736