LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0057	ATGCATTCCAAACCCATTCAATTGCTGCTTCTTTGCACTTTTGCTTTGTTTTCAGATGTTGTATTTGGTGATCCTCCGTATAGTATCTGTTCTTCAAGCGGTAGCTATGTAAACGGCAGTTCCTATGAAAACAATTTAAACAACCTGCTTTCATCTTTATCCTCCAATGCTTCAGACTACAAATTCTATAATACTTCTTATGGGATTGCCTCTGACAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTTCAAATGATAATTGCCAGAAATGCATCACAACAGTAACAGAGGATATTGTCAAACTGTGTCCTCAAGCAAAAGAAGCAATCGTGTGGGAAGAGTTGTGCCAGTTGCGTTATTCCAACATTAATTTCCTGGGTAGTTTGAATGTCACGGGGAACATTGGCTTAGATAATGTACAGAATCTTACAGAGCCAAAGAAGTTTGAGTCTGCTGTGAATGAGACACTAAGGAATCTTACTAAGGTAGCATCTTTTCATGTTTCGGCTAACATGTATGCTACTGGAGATGTCCCCTTTGGAGATCAAACAATATTTGCCTTAGTGCAGTGCACCAGAGATTTAGCTGCAAATGATTGTAATAGGTGCCTACAAAGTGCCATTGGAGATATACCAAATTGTTGCTATGCCTCCATCGGGGCCAGAGTTTTGAGCCGTAGCTGTTATTTAAGGTATGAATTTTATGCATTTTATAATGGTGTCACAGGACCAACAGATTCTTCAAATGGCAAGAAAGAAAGCAAAAATAAGTCAAGCAAAACATGGATGATTGCTGGAATTACAGTTGTGGTAGGCTTGGTCATAGTATTTTTCATTTTCGGACTGTACCTTTTCAGGAATAAAAGACATCGGCATGGTAAAAATGAAAGAGAAAATCATAACATCAATCTTGGATCTCTTCGAGTGGCTACCAATAATTTTTCTGATTTGAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGAAACTTGGTGATGGCCAAGAAGTAGCAATAAAGAGGTTATCAGCTTGCTCCGAACAAGGCTCGGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAGGAGAAGCTTCTCGTGTATGAATTTTTACCCAATGGTAGTCTTGATGTCGTACTCTTTGATCCAATGCAACGTGCACAACTGGATTGGAGCAAACGCCTCAATATCATAAATGGAATAGCAAGAGGGATACTTTATCTTCACGAAGATTCTCGACTGAAAGTGATTCATAGAGACCTGAAAGCAAGTAATGTATTGTTGGACTATGACATGAATGCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTTCAGGAAATGAAGGTGAAGCTAACACTGCTACAATAGTTGGAACATATGGGTATATGGCTCCAGAGTATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTTGGTTTTGGTGTACTATTGCTTGAGATCATTACAGGGAAACGTAATGCCGGTTTCTATCACTCTAAAAACACTCCTAGCCTTCTGTCATATGCATGGAGTCTATGGAATGAAGGAAAGGGTATAGAACTGAGTGATTCCTTGTTGTGTGATTCATGCCCTGGAGATGAGTTTTTGAGATACATGCAGATTGGACTGCTGTGTGTTCAAGAGGATGCATATGATAGACCAACCATGTCTTCTGTTGTGATGATGCTGAAGAATGAATCAGCTACGCTTGGCCATCCAGAAAAACCACCTTTCTCTGTAGGGAGATTCAATGCCAATGAACAAGATTCACAAGAATGCTCAGTCAATTTCTTAACCGTGTCAGATATATTACCCCAGTAA	1890	0.3942	MHSKPIQLLLLCTFALFSDVVFGDPPYSICSSSGSYVNGSSYENNLNNLLSSLSSNASDYKFYNTSYGIASDRVYGLYMCLDYISNDNCQKCITTVTEDIVKLCPQAKEAIVWEELCQLRYSNINFLGSLNVTGNIGLDNVQNLTEPKKFESAVNETLRNLTKVASFHVSANMYATGDVPFGDQTIFALVQCTRDLAANDCNRCLQSAIGDIPNCCYASIGARVLSRSCYLRYEFYAFYNGVTGPTDSSNGKKESKNKSSKTWMIAGITVVVGLVIVFFIFGLYLFRNKRHRHGKNERENHNINLGSLRVATNNFSDLNKLGQGGFGPVYKGKLGDGQEVAIKRLSACSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFDPMQRAQLDWSKRLNIINGIARGILYLHEDSRLKVIHRDLKASNVLLDYDMNAKISDFGMARIFSGNEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKNTPSLLSYAWSLWNEGKGIELSDSLLCDSCPGDEFLRYMQIGLLCVQEDAYDRPTMSSVVMMLKNESATLGHPEKPPFSVGRFNANEQDSQECSVNFLTVSDILPQ*	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0057	629	Gene3D	-	136	238	IPR038408	-
	Vra11g0057	629	Gene3D	-	26	126	IPR038408	-
	Vra11g0057	629	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	56	626	-	-
	Vra11g0057	629	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE KINASE	56	626	-	-
	Vra11g0057	629	Pfam	Salt stress response/antifungal	142	235	IPR002902	-
	Vra11g0057	629	Pfam	Salt stress response/antifungal	30	123	IPR002902	-
	Vra11g0057	629	Pfam	Protein tyrosine and serine/threonine kinase	319	585	IPR001245	GO:0004672\|GO:0006468
	Vra11g0057	629	ProSiteProfiles	Gnk2-homologous domain profile.	132	238	IPR002902	-
	Vra11g0057	629	SMART	serkin_6	315	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra11g0057	629	ProSitePatterns	N-6 Adenine-specific DNA methylases signature.	21	27	IPR002052	GO:0003676\|GO:0008168\|GO:0032259
	Vra11g0057	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468
	Vra11g0057	629	Gene3D	Transferase(Phosphotransferase) domain 1	391	596	-	-
	Vra11g0057	629	Gene3D	Phosphorylase Kinase; domain 1	284	390	-	-
	Vra11g0057	629	SUPERFAMILY	Protein kinase-like (PK-like)	301	612	IPR011009	-
	Vra11g0057	629	CDD	STKc_IRAK	321	588	-	-
	Vra11g0057	629	ProSiteProfiles	Gnk2-homologous domain profile.	24	126	IPR002902	-
	Vra11g0057	629	ProSiteProfiles	Protein kinase domain profile.	315	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g0057	Vra-Chr11	417345	419841	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0057	21	601	Receptor kinase-like Gene Family	AT4G05200	44.065	2.13e-173	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra11g0057		PK_Tyr_Ser-Thr	1.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0057	-		-	gmx:100798666	1046.19