Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0055 ATGAGTGAACGAACGCTATTACAAGAGTTGACTACCCCTAGGCATGTGGCAGTCACAGAAGAAGGTGATTTAATTAGTTCCGAAGAACTGTTGTTCATGACTTTAGCTTCAATCAGGGTTGCTACTGATGACTTTTCAGATACAAATAAGCTGGGACAAGGAGGGTTTGGTGCAGTTTACAAGGGTGTTCTGGCAGATGGTAATGAAGTAGCAGTCAAAAGATTGTCGAGGAAATCTTGGCAAGGCATAGAGGAATTTAAAAATGAAGTTGTGCTGATTGCCAAACTTCAACACAAGAATTTGGTGAGGCTGTTAGGTTGTGCCTTGGAGGGAGAAGAAAAGTTACTGATATATGAATTCATGTCAAACAAAAGCCTTGATCAACTTATATTTGATCCAGAAAAACGTTCAAAACTTGATTGGAAGACATACAATGGTATTATCAATGGCATAGCGAGAGGACTGCTTTATCTCCACGAGGAGTCTCGCCTTAAAATCATTCACAGAGACTTAAAACCCAATAACGTGTTGTTAGACCACGAACTGTTGGCTAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAACACCAAAAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAAGGATTGTTCAGTGTGAAATCCGATGTGTTCAGCTTTGGCGTTATCTTGCTTGAAATCATCAGCGGAAAAAGAAACAGTGGTTTTTACCAAACCGAACTTGCCCCGACACTGCTGGCATATGCATGGCGAGTGTGGAATGAAGGAAAAGCATTGGACTTTGTGGATCCAGTGGTGTTGGAATCATGCCTTGCATCTGAAGTTGTAAGATGCATGCACATTGGGCTGCTGTGCGTGCAGGAAAATCCGGAACACAGGCCCACCATGTCAGCTGTGATGCTTCTCCTGGGAAGTGAATCAATGGTCCTTCCCCAACCAAAACAGCCTGCTTTTTCTTTGAGTAGGGTGCTTCGTCTCGATCCATCTTCAAAAACCAACCCTTCGGAAAACGAGATTATATTTTCTGAAATTTTACCTCGATGA 1083 0.422 MSERTLLQELTTPRHVAVTEEGDLISSEELLFMTLASIRVATDDFSDTNKLGQGGFGAVYKGVLADGNEVAVKRLSRKSWQGIEEFKNEVVLIAKLQHKNLVRLLGCALEGEEKLLIYEFMSNKSLDQLIFDPEKRSKLDWKTYNGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELLAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKRNSGFYQTELAPTLLAYAWRVWNEGKALDFVDPVVLESCLASEVVRCMHIGLLCVQENPEHRPTMSAVMLLLGSESMVLPQPKQPAFSLSRVLRLDPSSKTNPSENEIIFSEILPR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0055 360 Gene3D Phosphorylase Kinase; domain 1 20 120 - -
Vra11g0055 360 ProSiteProfiles Protein kinase domain profile. 45 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0055 360 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 358 - -
Vra11g0055 360 Gene3D Transferase(Phosphotransferase) domain 1 121 323 - -
Vra11g0055 360 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 358 - -
Vra11g0055 360 SUPERFAMILY Protein kinase-like (PK-like) 27 315 IPR011009 -
Vra11g0055 360 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Vra11g0055 360 SMART serkin_6 45 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g0055 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vra11g0055 360 Pfam Protein tyrosine and serine/threonine kinase 48 313 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0055 Vra-Chr11 413001 414699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0055 16 341 Receptor kinase-like Gene Family AT4G23140 56.928 4.06e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra11g0055 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0055 - - gmx:102669229 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0055 11 413001 414699 Vra11g0055 11 413001 414699 ECH